{"id":"W2150152371","doi":"10.1074/mcp.m111.016378","title":"Quantitative Proteomics Reveals That Only a Subset of the Endoplasmic Reticulum Contributes to the Phagosome","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Medical Research Council; Canadian Institutes of Health Research; Deutsche Forschungsgemeinschaft","keywords":"Phagosome; Endoplasmic reticulum; Endosome; Cell biology; Organelle; Golgi apparatus; Proteome; Biology; Phagocytosis; Proteomics; Chemistry; Biochemistry; Intracellular","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004244415,0.0004211168,0.0004392716,0.0003698342,0.0002166107,0.0005958325,0.000253576,0.0004067293,0.000373047],"category_scores_gemma":[0.0003380202,0.0001819864,0.0003384571,0.0003045991,0.0002770593,0.0004281136,0.0002689424,0.0004371479,0.000418355],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002300325,"about_ca_system_score_gemma":0.0002667801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004128601,"about_ca_topic_score_gemma":0.000425005,"domain_scores_codex":[0.9997054,0.00002950502,0.00002005751,0.0001071755,0.00009546698,0.00004246507],"domain_scores_gemma":[0.9997754,0.00005552934,0.00004840271,0.00003696851,0.00005846299,0.0000253134],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002547144,0.000005603711,0.0003630997,0.00003117182,0.000005560887,0.00002016817,0.000008037654,0.00001780643,0.9985796,0.00003595102,0.00001466764,0.0008927589],"study_design_scores_gemma":[0.000007552979,0.0001981833,0.03423337,0.00002135286,0.00006296644,0.0006922792,0.00009927034,0.002033429,0.9591747,0.0002380162,0.003223912,0.00001488641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9722129,0.003988032,0.02137255,0.0002549218,0.00004862267,0.0000241013,0.0006715814,0.0001492219,0.001277993],"genre_scores_gemma":[0.9748402,0.003128194,0.01852434,0.0003098059,0.00004067522,0.00004711744,0.001148403,0.00007864572,0.001882597],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005958325,"threshold_uncertainty_score":0.002244711,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01198468943516023,"score_gpt":0.2267990200114406,"score_spread":0.2148143305762804,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}