{"id":"W2150263331","doi":"10.15698/mic2015.07.215","title":"Evolutionary rewiring of bacterial regulatory networks","year":2015,"lang":"en","type":"letter","venue":"Microbial Cell","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Moncton","funders":"National Institute of Food and Agriculture; Leverhulme Trust; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; U.S. Department of Agriculture","keywords":"Horizontal gene transfer; Gene; Computational biology; Gene duplication; Biology; Homology (biology); Function (biology); Genome; Gene regulatory network; Systems biology; Genetics; Evolutionary biology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001520012,0.0002778326,0.000289086,0.00006269434,0.00004416822,0.00001322011,0.0003302413,0.001239615,0.0001014215],"category_scores_gemma":[0.00001554786,0.0003109911,0.0001957967,0.00006292995,0.0001569646,0.0000017669,0.0002379897,0.0004707055,0.00001951892],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000545318,"about_ca_system_score_gemma":0.0002837845,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000150867,"about_ca_topic_score_gemma":0.00001274435,"domain_scores_codex":[0.9985773,0.0001095364,0.0003670096,0.0004434698,0.0001613468,0.0003413566],"domain_scores_gemma":[0.9989184,0.000006502059,0.0002422092,0.0005786472,0.0001927676,0.00006143232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004195181,0.00001928312,0.00001723812,0.00005756649,0.00002630041,0.000006406152,0.000007094437,0.0006822434,0.2227977,9.36745e-7,0.7762972,0.00004616943],"study_design_scores_gemma":[0.0004868645,0.0001218022,0.00006082878,0.00002643515,0.00004342862,0.00002410737,0.000004139401,0.0001695936,0.008065625,0.00001277262,0.9906486,0.0003358156],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"commentary","genre_scores_codex":[0.5591903,0.08577967,0.03037385,0.1370439,0.05072773,0.006490098,0.006427894,0.000553824,0.1234128],"genre_scores_gemma":[0.1822344,0.002070526,0.01213969,0.4182792,0.09046597,0.00006836168,0.08695429,0.0009329115,0.2068547],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.3769559,"threshold_uncertainty_score":0.9999342,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006505314472541218,"score_gpt":0.196931684403769,"score_spread":0.1904263699312278,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}