{"id":"W2150263331","doi":"10.15698/mic2015.07.215","title":"Evolutionary rewiring of bacterial regulatory networks","year":2015,"lang":"en","type":"letter","venue":"Microbial Cell","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Moncton","funders":"National Institute of Food and Agriculture; Leverhulme Trust; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; U.S. Department of Agriculture","keywords":"Horizontal gene transfer; Gene; Computational biology; Gene duplication; Biology; Homology (biology); Function (biology); Genome; Gene regulatory network; Systems biology; Genetics; Evolutionary biology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015973,0.0002849289,0.0003484589,0.0002431505,0.000682621,0.000987543,0.0008234265,0.003394283,0.001930481],"category_scores_gemma":[0.004326774,0.0002848314,0.0003408392,0.0001800436,0.00211403,0.001971735,0.001216481,0.004265669,0.0007637452],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001113414,"about_ca_system_score_gemma":0.0002572577,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000444652,"about_ca_topic_score_gemma":0.0008885674,"domain_scores_codex":[0.9992078,0.0002328511,0.00005316588,0.0001958153,0.0001567684,0.0001537426],"domain_scores_gemma":[0.9974977,0.001175985,0.0002656138,0.0006463097,0.0002072925,0.0002070053],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.001361526,0.0002814691,0.01626837,0.0005389178,0.0005340551,0.01581082,0.002579133,0.01816563,0.2724488,0.2136138,0.06174843,0.3966491],"study_design_scores_gemma":[0.0006278456,0.0007745491,0.04233371,0.0004163439,0.000269184,0.02443903,0.001757347,0.03851978,0.05614606,0.3391589,0.4952817,0.0002756317],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4763795,0.01482622,0.0498445,0.4182585,0.004895973,0.0001009212,0.0002202294,0.0008983692,0.03457575],"genre_scores_gemma":[0.9180899,0.005327899,0.005309991,0.0630635,0.003485442,0.00009276211,0.00006641902,0.00007412354,0.004489847],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003394283,"threshold_uncertainty_score":0.008447409,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006505314472541218,"score_gpt":0.196931684403769,"score_spread":0.1904263699312278,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}