{"id":"W2150577437","doi":"10.1038/sj.bjc.6605338","title":"COGENT (COlorectal cancer GENeTics): an international consortium to study the role of polymorphic variation on the risk of colorectal cancer","year":2009,"lang":"en","type":"article","venue":"British Journal of Cancer","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Cancer Care Ontario; University of Ottawa; University of Toronto; Ontario Institute for Cancer Research","funders":"Instituto de Salud Carlos III; Universität Greifswald; Xunta de Galicia; Deutsche Krebshilfe; Siemens; Bundesministerium für Bildung und Forschung; Associazione Italiana per la Ricerca sul Cancro; Fonds NutsOhra; Grantová Agentura České Republiky; European Commission; Fondazione Italiana per la Ricerca sul Cancro; Vetenskapsrådet; Ontario Institute for Cancer Research; National Health and Medical Research Council; Cancer Research UK; Universidad del Tolima; Swedish Cancer Foundation; National Cancer Institute; KWF Kankerbestrijding; Ministry of Cultural Affairs; Genome Canada","keywords":"Penetrance; Colorectal cancer; Cancer genetics; Multifactorial Inheritance; Cancer; Genetics; Inheritance (genetic algorithm); Human genetics; Biology; Genetic variants; Medicine; Oncology; Bioinformatics; Single-nucleotide polymorphism; Genotype; Gene; Phenotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007695492,0.0002152081,0.0005066834,0.0001394062,0.000132821,0.00004452184,0.000534939,0.00009931745,0.001344167],"category_scores_gemma":[0.0002628037,0.0001550777,0.0002115849,0.0003438255,0.0001589002,0.0000861615,0.00005479304,0.0005114434,0.000001346843],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004239124,"about_ca_system_score_gemma":0.0007254977,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005131032,"about_ca_topic_score_gemma":0.004770025,"domain_scores_codex":[0.997121,0.0002916731,0.0008738042,0.0002711496,0.001161705,0.0002806895],"domain_scores_gemma":[0.9973414,0.0001740672,0.0009928619,0.0002198236,0.001088928,0.0001829017],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004965924,0.001512398,0.5743599,0.0000134765,0.001867125,0.00005352718,0.003788124,0.008940606,0.1371987,0.00004836756,0.0005215067,0.2667304],"study_design_scores_gemma":[0.001669632,0.003120343,0.8845437,0.0002603137,0.0005580196,0.0001360362,0.0005802307,0.0003994235,0.10778,0.0001527634,0.0006555868,0.0001439449],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884642,0.007242532,0.00002497341,0.001361644,0.001342781,0.001014207,0.0002747395,0.000008569025,0.0002663297],"genre_scores_gemma":[0.9936627,0.004679301,0.0001485631,0.0006047414,0.0007230806,0.0001160953,0.000002036301,0.00002995278,0.00003359172],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3101838,"threshold_uncertainty_score":0.9995688,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01633299965688781,"score_gpt":0.3029934303844429,"score_spread":0.2866604307275551,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}