{"id":"W2150766693","doi":"10.3389/fmicb.2015.01036","title":"Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium","year":2015,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Michael's Hospital; McGill Genome Centre; McMaster University; University of British Columbia; University of Guelph; Armand Frappier Museum; University of Calgary; Simon Fraser University; McGill University; Institut universitaire de cardiologie et de pneumologie de Québec; Université de Montréal; Institut National de la Recherche Scientifique; Ottawa Hospital; Université de Sherbrooke; Université Laval","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Biotechnology and Biological Sciences Research Council; Medical Research Council; National Institutes of Health; Cystic Fibrosis Canada; Genome Canada; Canadian Institutes of Health Research; Queensland Health; Cisco Systems Canada; National Health and Medical Research Council; Prince Charles Hospital Foundation; Cystic Fibrosis Trust; Villum Fonden; Royal College of Surgeons in Ireland; Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Foundation Therapeutics; Cisco Systems","keywords":"Pseudomonas aeruginosa; Biology; Genome; Antibiotic resistance; Genomics; Virulence; Whole genome sequencing; Comparative genomics; Computational biology; Microbiology; Genetics; Gene; Antibiotics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006810644,0.00009676482,0.0001779253,0.00002794695,0.00002002111,0.000009738808,0.0005391677,0.0001946438,0.0000040647],"category_scores_gemma":[0.0002574402,0.00007661185,0.00003474318,0.0000487903,0.0002661912,0.000004898316,0.00034449,0.00009689623,0.00000229649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001762744,"about_ca_system_score_gemma":0.0001320682,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002265957,"about_ca_topic_score_gemma":0.00002269812,"domain_scores_codex":[0.9989275,0.0001504905,0.0003703049,0.0003646692,0.00003033325,0.0001566918],"domain_scores_gemma":[0.9991937,0.00001136623,0.0001600013,0.0005183454,0.00008240796,0.00003418963],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001493779,0.0000416647,0.0246767,0.000001787628,0.00004229893,5.132669e-7,0.00001861871,0.000003036636,0.7988958,0.000009318912,0.1737357,0.00242515],"study_design_scores_gemma":[0.0009029092,0.0001183653,0.0006228929,0.000005557636,0.00001554293,0.0000261705,0.0001598213,0.0001483598,0.470661,0.00001701856,0.5271905,0.0001318533],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933896,0.001122531,0.001113784,0.000659594,0.003139256,0.0001650703,0.0002751969,0.000004440901,0.00013053],"genre_scores_gemma":[0.9883191,0.0004652142,0.006677914,0.0005507136,0.0003610008,0.000002378235,0.003441724,0.00001481809,0.0001671655],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3534548,"threshold_uncertainty_score":0.3124141,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04988434663244504,"score_gpt":0.3027592971303265,"score_spread":0.2528749504978814,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}