{"id":"W2150766693","doi":"10.3389/fmicb.2015.01036","title":"Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium","year":2015,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Michael's Hospital; McGill Genome Centre; McMaster University; University of British Columbia; University of Guelph; Armand Frappier Museum; University of Calgary; Simon Fraser University; McGill University; Institut universitaire de cardiologie et de pneumologie de Québec; Université de Montréal; Institut National de la Recherche Scientifique; Ottawa Hospital; Université de Sherbrooke; Université Laval","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Biotechnology and Biological Sciences Research Council; Medical Research Council; National Institutes of Health; Cystic Fibrosis Canada; Genome Canada; Canadian Institutes of Health Research; Queensland Health; Cisco Systems Canada; National Health and Medical Research Council; Prince Charles Hospital Foundation; Cystic Fibrosis Trust; Villum Fonden; Royal College of Surgeons in Ireland; Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Foundation Therapeutics; Cisco Systems","keywords":"Pseudomonas aeruginosa; Biology; Genome; Antibiotic resistance; Genomics; Virulence; Whole genome sequencing; Comparative genomics; Computational biology; Microbiology; Genetics; Gene; Antibiotics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004630916,0.0009049027,0.001318607,0.008903306,0.0008196328,0.002292057,0.001160213,0.001085662,0.01414159],"category_scores_gemma":[0.0179506,0.000392201,0.0006566009,0.0107513,0.0003945807,0.001025779,0.003067397,0.001396214,0.008033712],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009199783,"about_ca_system_score_gemma":0.002968645,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01068874,"about_ca_topic_score_gemma":0.01018475,"domain_scores_codex":[0.9959972,0.0008988511,0.0006095806,0.0007785889,0.001366901,0.0003489039],"domain_scores_gemma":[0.9862502,0.002883566,0.002012557,0.002519639,0.004539526,0.001794538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.003144011,0.0005379381,0.2911901,0.004260824,0.0007226057,0.003217239,0.001764892,0.001527677,0.02713711,0.004753487,0.3842285,0.2775156],"study_design_scores_gemma":[0.0004953851,0.0005890892,0.4037117,0.00197757,0.0004632306,0.004792879,0.001490864,0.004084525,0.0157112,0.007415288,0.5590059,0.0002624058],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.09466542,0.008960895,0.0327411,0.008109245,0.0004732702,0.001898123,0.7998536,0.003833227,0.0494651],"genre_scores_gemma":[0.2003323,0.005793333,0.05001942,0.002779184,0.0004417398,0.00144866,0.7332377,0.001124934,0.004822729],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01414159,"threshold_uncertainty_score":0.04730833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04988434663244504,"score_gpt":0.3027592971303265,"score_spread":0.2528749504978814,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}