{"id":"W2150937921","doi":"10.1186/1471-2407-12-543","title":"PTENgenomic deletion predicts prostate cancer recurrence and is associated with low AR expression and transcriptional activity","year":2012,"lang":"en","type":"article","venue":"BMC Cancer","topic":"PI3K/AKT/mTOR signaling in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Prostate Cancer Canada; McGill University","keywords":"PTEN; Prostate cancer; Immunohistochemistry; Cancer research; Tumor suppressor gene; Androgen receptor; Surgical oncology; Biology; Medicine; Cancer; Internal medicine; PI3K/AKT/mTOR pathway; Carcinogenesis; Signal transduction; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001459652,0.0001658558,0.0001353844,0.00002355298,0.00009541173,0.00002153161,0.00005941292,0.0001352553,0.00005504973],"category_scores_gemma":[0.00002023751,0.0001437607,0.00002682015,0.00005634167,0.000113622,0.00002333214,0.00003270006,0.0001068673,6.374383e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008423401,"about_ca_system_score_gemma":0.0001699245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001740748,"about_ca_topic_score_gemma":0.000423934,"domain_scores_codex":[0.999057,0.00005741033,0.0001064264,0.0003377105,0.0001582109,0.0002832456],"domain_scores_gemma":[0.9995503,0.0000129665,0.0001047083,0.0001305908,0.00007932394,0.000122155],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004693614,0.00005488936,0.123339,0.00006134504,0.00005669363,2.713708e-7,0.0003977193,0.00009437065,0.8701481,0.000003629246,0.001369436,0.004005154],"study_design_scores_gemma":[0.002119643,0.0002625521,0.3889619,0.0005211575,0.00009936171,0.00001179503,0.00003598976,0.0003384912,0.5982788,0.00001744457,0.008852802,0.0005001281],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.983593,0.01485708,0.0005033459,0.00008205314,0.0002355217,0.0002532958,0.0004198035,0.00001436671,0.00004146868],"genre_scores_gemma":[0.9961825,0.00262734,0.0001773254,0.0001615066,0.000318866,0.000207481,0.00005395199,0.00002440885,0.000246592],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2718694,"threshold_uncertainty_score":0.5862392,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01622961340339559,"score_gpt":0.2607547258375999,"score_spread":0.2445251124342043,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}