{"id":"W2151091336","doi":"10.1111/j.1574-6968.2002.tb11051.x","title":"Diversity and phylogenetic analysis of bacteria in the mucosa of chicken ceca and comparison with bacteria in the cecal lumen","year":2002,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":252,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Bacteria; Microbiology; 16S ribosomal RNA; Phylogenetic tree; Ribosomal RNA; Intestinal mucosa; Terminal restriction fragment length polymorphism; Population; Restriction fragment length polymorphism; Genetics; Polymerase chain reaction; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002667588,0.0001321058,0.0003138277,0.0001137912,0.000112326,0.000005935063,0.0002332037,0.0001191542,0.00001468509],"category_scores_gemma":[0.000005981593,0.00008305677,0.00004419545,0.0002137775,0.0003610576,0.000002873815,0.0002211845,0.0001228544,3.636604e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007177396,"about_ca_system_score_gemma":0.000006945545,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003257449,"about_ca_topic_score_gemma":0.001600669,"domain_scores_codex":[0.9989771,0.0002891977,0.0002342114,0.0002598512,0.00002946667,0.0002102357],"domain_scores_gemma":[0.9995526,0.00003635731,0.0001287136,0.0002479764,0.00001469765,0.00001961987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004516037,0.00004978961,0.3694812,0.00001248071,0.00008726204,0.000001651162,0.0025922,0.000006516269,0.6274716,0.000002000013,0.0002041105,0.00004594746],"study_design_scores_gemma":[0.0006861693,0.0002385002,0.988818,0.00001033276,0.0001292266,0.00002900468,0.0004004629,0.00002272885,0.008738626,0.000001011065,0.0008176405,0.0001083339],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998135,0.0003713357,0.00001153213,0.00119619,0.00002173598,0.0001904223,0.00005787399,0.000001213276,0.00001467319],"genre_scores_gemma":[0.9984183,0.0001539511,0.0001187335,0.001169254,0.00001578592,0.00000366581,0.0001115571,0.000004760515,0.000003993337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6193367,"threshold_uncertainty_score":0.3386957,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01297389745063619,"score_gpt":0.2188736257147393,"score_spread":0.2058997282641031,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}