{"id":"W2151420526","doi":"10.1109/csbw.2005.35","title":"cis-Regulatory Element Prediction in Mammalian Genomes","year":2006,"lang":"en","type":"article","venue":"","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Gene; Computational biology; Biology; Sequence motif; Genome; Regulatory sequence; Motif (music); Genetics; Gene prediction; Regulation of gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001145346,0.0009232136,0.001030082,0.002342116,0.0007030693,0.000875839,0.00105798,0.000998745,0.004794985],"category_scores_gemma":[0.002458822,0.0007409818,0.001394936,0.002108408,0.0002677867,0.0007350041,0.0009039044,0.001030243,0.003694566],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006157951,"about_ca_system_score_gemma":0.0007272748,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002664642,"about_ca_topic_score_gemma":0.003671206,"domain_scores_codex":[0.9993712,0.0001149844,0.00003511583,0.0003038531,0.0001221179,0.00005269008],"domain_scores_gemma":[0.9995322,0.0002047,0.00006443188,0.00007093477,0.00008521188,0.00004255305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0022785,0.0003479494,0.0473481,0.004187314,0.0007194236,0.001145982,0.0008343988,0.06855023,0.5012329,0.0190862,0.04291293,0.3113562],"study_design_scores_gemma":[0.0004376761,0.0007014633,0.0915276,0.0005939936,0.0005555483,0.002012552,0.0005020754,0.5269054,0.1974097,0.04854922,0.1305848,0.0002199788],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2370634,0.004820263,0.6156034,0.000551092,0.0001380115,0.0002935468,0.08907617,0.04577266,0.006681393],"genre_scores_gemma":[0.2444272,0.001572285,0.6175589,0.0003663131,0.00004882218,0.0003918502,0.1305304,0.002802438,0.002301771],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.004794985,"threshold_uncertainty_score":0.0160408,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003140755959435966,"score_gpt":0.1880312761659984,"score_spread":0.1848905202065625,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}