{"id":"W2151529778","doi":"10.1101/gr.082081.108","title":"genBlastA: Enabling BLAST to identify homologous gene sequences","year":2008,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":448,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Michael Smith Health Research BC","keywords":"Biology; Gene; Homologous chromosome; Genome; Genetics; Computational biology; Candidate gene; Homologous recombination; Gene prediction","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002059185,0.002037062,0.001748739,0.003071259,0.001220636,0.001690685,0.00245197,0.001560511,0.005836687],"category_scores_gemma":[0.003643142,0.001131775,0.001145277,0.002996627,0.0006352694,0.001957731,0.001715451,0.002140128,0.006258747],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007314016,"about_ca_system_score_gemma":0.0009084239,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001296942,"about_ca_topic_score_gemma":0.001768871,"domain_scores_codex":[0.9990513,0.0002423201,0.0001062294,0.0002903053,0.0002277611,0.00008215917],"domain_scores_gemma":[0.9990557,0.0005482039,0.0001155151,0.0001138927,0.0001112594,0.00005541645],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004138326,0.0005827883,0.0103394,0.00572297,0.0006845348,0.001492277,0.001250521,0.01720168,0.3281077,0.02349282,0.1839128,0.4230742],"study_design_scores_gemma":[0.000843048,0.0006719545,0.009581284,0.0004564839,0.0002825499,0.002990337,0.0007413076,0.3209598,0.2337631,0.03914657,0.3902164,0.000347318],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.03933615,0.002165884,0.7709078,0.0005536483,0.0002619553,0.0005424026,0.01334416,0.1664576,0.006430305],"genre_scores_gemma":[0.04772712,0.001247999,0.9187722,0.0002679458,0.00004032245,0.0006243319,0.02425376,0.005495884,0.001570359],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.005836687,"threshold_uncertainty_score":0.01952571,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08839709977521111,"score_gpt":0.3692360436837064,"score_spread":0.2808389439084953,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}