{"id":"W2151558818","doi":"10.1186/s12864-015-2087-y","title":"Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Trent University; Nottingham Trent University","keywords":"Biology; Campylobacter jejuni; Genetics; Genome; Comparative genomics; Cytolethal distending toxin; Gene; Phylogenetic tree; Phylogenetics; Campylobacter; Genomics; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001113384,0.0004156364,0.0002468734,0.0007418805,0.0002372518,0.0002981039,0.0001919493,0.0003795596,0.001495635],"category_scores_gemma":[0.0003768708,0.0001440289,0.0002905603,0.0006669727,0.000309433,0.0001123974,0.0004450277,0.0005076511,0.000187151],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002602289,"about_ca_system_score_gemma":0.0002164012,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001162535,"about_ca_topic_score_gemma":0.001465151,"domain_scores_codex":[0.9998242,0.00001511782,0.00001538584,0.00004584545,0.000051015,0.00004840526],"domain_scores_gemma":[0.9995165,0.00009136744,0.0001900682,0.00003250873,0.0000554123,0.0001142042],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000909314,0.0001995294,0.03929852,0.0001307831,0.00006953207,0.001081921,0.00024096,0.0002166749,0.9530957,0.00009051015,0.0001347019,0.004531787],"study_design_scores_gemma":[0.00002986062,0.0005984782,0.930639,0.00002998756,0.0001334937,0.005567129,0.0004127649,0.000957583,0.06022145,0.000143047,0.001234763,0.00003242892],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988481,0.00008719661,0.0002988745,0.0000180934,0.000003192685,0.00001711118,0.0003727177,0.00001164547,0.0003431045],"genre_scores_gemma":[0.9980293,0.00005653376,0.0007517159,0.00002708993,0.000003830724,0.00001700833,0.0007946945,0.00001435605,0.0003055848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001495635,"threshold_uncertainty_score":0.005003393,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0602950365082231,"score_gpt":0.2162991793809373,"score_spread":0.1560041428727142,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}