{"id":"W2151570682","doi":"10.1093/annonc/mdt393","title":"Combined HER2 analysis of biopsies and surgical specimens to optimize detection of trastuzumab-eligible patients in eso-gastric adenocarcinoma: a GERCOR study","year":2013,"lang":"en","type":"article","venue":"Annals of Oncology","topic":"HER2/EGFR in Cancer Research","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":false,"ca_institutions":"Centre Hospitalier Universitaire de Sherbrooke","funders":"Roche","keywords":"Medicine; CISH; Trastuzumab; Immunohistochemistry; Adenocarcinoma; Internal medicine; Biopsy; Pathology; Oncology; Cancer; Gastroenterology; In situ hybridization; Breast cancer; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005969996,0.0001325729,0.001071459,0.001320894,0.00001826807,0.000004459967,0.0001203118,0.0001253536,0.000236319],"category_scores_gemma":[0.0002943575,0.0001156591,0.0001182316,0.00182994,0.000160742,0.00005436343,0.0001106752,0.0001731092,0.000005774332],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009965928,"about_ca_system_score_gemma":0.000145729,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00481116,"about_ca_topic_score_gemma":0.0006835663,"domain_scores_codex":[0.9980163,0.000253763,0.0007335382,0.0002968605,0.0003905803,0.0003089456],"domain_scores_gemma":[0.9982671,0.0003473948,0.0002033737,0.0002808145,0.0007326697,0.0001686949],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001604225,0.004161895,0.9717328,0.00009584192,0.0007427777,0.00003847095,0.001568474,0.0001880547,0.003991291,0.000004067104,0.0004392038,0.01543292],"study_design_scores_gemma":[0.003902698,0.02203856,0.9665508,0.00002901623,0.0002556185,0.000004297603,0.001152275,0.0004575689,0.005413012,0.00001355016,0.0001075318,0.00007508593],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974331,0.0002088353,0.00001107801,0.0006583828,0.0000417323,0.001141712,0.00001751945,0.000007014859,0.0004806755],"genre_scores_gemma":[0.9993131,0.0001747999,0.0002593213,0.0000638233,0.0000181605,0.00008525947,0.0000076221,0.00001234661,0.00006561323],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01787666,"threshold_uncertainty_score":0.7273066,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07667223111877967,"score_gpt":0.4079110863048577,"score_spread":0.331238855186078,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}