{"id":"W2151850577","doi":"10.1128/jcm.01474-06","title":"Phylogenetic Comparisons Reveal Multiple Acquisitions of the Toxin Genes by Enterotoxigenic <i>Escherichia coli</i> Strains of Different Evolutionary Lineages","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; University of Birmingham; Wellcome Trust","keywords":"Enterotoxigenic Escherichia coli; Biology; Microbiology; Virulence; Multilocus sequence typing; Escherichia coli; Diarrhea; Pathogen; Phylogenetic tree; Enterotoxin; Toxin; Shiga toxin; Pathovar; Gene; Genetics; Bacteria; Genotype; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003365058,0.0002459372,0.0003001009,0.0007212218,0.0002925182,0.0004768689,0.0001801544,0.0003463578,0.0006621024],"category_scores_gemma":[0.0008335508,0.0001532406,0.0002587494,0.0007580966,0.0002045987,0.0002197827,0.0004178882,0.0004960648,0.0002489525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001566174,"about_ca_system_score_gemma":0.0001329453,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005948931,"about_ca_topic_score_gemma":0.0005274561,"domain_scores_codex":[0.999597,0.00009576647,0.00004224864,0.00007645851,0.00007316031,0.0001152564],"domain_scores_gemma":[0.9992678,0.0001796462,0.0002299239,0.00006095574,0.0001212987,0.0001404455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0017173,0.0001960426,0.1534833,0.0001298565,0.0001692714,0.0006200558,0.0007237078,0.0005326705,0.8286112,0.000274841,0.0001401317,0.01340154],"study_design_scores_gemma":[0.00002785787,0.000762653,0.9634566,0.00004492914,0.0001627309,0.002829661,0.001116825,0.00117162,0.02782785,0.0001612039,0.002413759,0.00002430759],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989697,0.00016283,0.0003690826,0.00001914728,0.000003099381,0.000005800277,0.0001182499,0.000004115457,0.0003481209],"genre_scores_gemma":[0.9985235,0.0001451649,0.0005244657,0.00004510029,0.000004178215,0.000006433276,0.0005838411,0.000004922907,0.0001623068],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007212218,"threshold_uncertainty_score":0.002214909,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02246482068054887,"score_gpt":0.3172218417544278,"score_spread":0.2947570210738789,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}