{"id":"W2151870982","doi":"10.1128/jb.01340-08","title":"Insertion and Deletion Events That Define the Pathogen<i>Mycobacterium avium</i>subsp.<i>paratuberculosis</i>","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"McGill University","keywords":"Biology; Paratuberculosis; Microbiology; Pathogen; Mycobacterium; Mycobacterium avium subsp. paratuberculosis; Virology; Mycobacterium avium complex; Human pathogen; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000134627,0.0002933684,0.0002179248,0.0003071802,0.0001900933,0.0003040151,0.0002756323,0.0005341748,0.0007297022],"category_scores_gemma":[0.0005445653,0.0002066647,0.0002964728,0.0003353794,0.0002546699,0.0001846787,0.00034463,0.0006242132,0.0004227613],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000255873,"about_ca_system_score_gemma":0.0002152743,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000869456,"about_ca_topic_score_gemma":0.001523136,"domain_scores_codex":[0.9997665,0.00003160043,0.00002103441,0.00008258175,0.00003745647,0.00006088371],"domain_scores_gemma":[0.9996469,0.00007266851,0.0001597394,0.00004285901,0.00002239077,0.00005552867],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002281255,0.00008157028,0.01315692,0.0000581438,0.00001659864,0.0003653252,0.0001428454,0.0002631329,0.9810323,0.0002623071,0.00004720764,0.004345537],"study_design_scores_gemma":[0.00006036834,0.00117782,0.4702097,0.00006062155,0.0001597695,0.009352266,0.000634625,0.00316436,0.5078616,0.0005617075,0.006711106,0.00004602021],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951763,0.0003417488,0.003213078,0.00003387402,0.000007160998,0.00004765858,0.0005857029,0.00003244833,0.0005621193],"genre_scores_gemma":[0.990796,0.0001993931,0.006431397,0.00006079204,0.00000838123,0.00004458453,0.002079628,0.00002398709,0.000355927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000869456,"threshold_uncertainty_score":0.002441108,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03215068966668336,"score_gpt":0.2701132857924184,"score_spread":0.237962596125735,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}