{"id":"W2151870982","doi":"10.1128/jb.01340-08","title":"Insertion and Deletion Events That Define the Pathogen<i>Mycobacterium avium</i>subsp.<i>paratuberculosis</i>","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"McGill University","keywords":"Biology; Paratuberculosis; Microbiology; Pathogen; Mycobacterium; Mycobacterium avium subsp. paratuberculosis; Virology; Mycobacterium avium complex; Human pathogen; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006103655,0.0002010145,0.0005256478,0.0001849947,0.0001794679,0.00001975134,0.0001497465,0.0001859906,0.0001716653],"category_scores_gemma":[0.0003082272,0.0001232628,0.0001983909,0.000164747,0.0001829772,0.0002470571,0.00007888391,0.0005153253,0.00003645046],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009564426,"about_ca_system_score_gemma":0.0001863452,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003187046,"about_ca_topic_score_gemma":0.0000107276,"domain_scores_codex":[0.9982387,0.0003102842,0.0005506389,0.0001981588,0.000332072,0.0003701543],"domain_scores_gemma":[0.9985157,0.0002273847,0.0003799782,0.00026045,0.000313066,0.0003034765],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001236743,0.0002007489,0.6069725,0.0000578317,0.0001409666,0.0003057522,0.000211019,8.44536e-7,0.3855633,0.00002371377,0.003519248,0.001767332],"study_design_scores_gemma":[0.001624619,0.001382066,0.9608217,0.00009059294,0.0001337522,0.01335569,0.00004125957,0.00001000433,0.004550836,0.0000841833,0.01778855,0.000116684],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932249,0.001219394,0.00006770544,0.004540754,0.0004704351,0.0002321698,0.00001700766,0.00001406998,0.0002135712],"genre_scores_gemma":[0.9892634,0.008124209,0.0003195509,0.001605756,0.000535396,0.00001456604,0.00003318492,0.00002146663,0.00008249895],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3810125,"threshold_uncertainty_score":0.5026513,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03215068966668336,"score_gpt":0.2701132857924184,"score_spread":0.237962596125735,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}