{"id":"W2151972914","doi":"10.1099/vir.0.19612-0","title":"Topogenesis in membranes of the NTB–VPg protein of Tomato ringspot nepovirus: definition of the C-terminal transmembrane domain","year":2004,"lang":"en","type":"article","venue":"Journal of General Virology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Transmembrane domain; Amino acid; Transmembrane protein; Nepovirus; Biochemistry; C-terminus; Membrane topology; Endoplasmic reticulum; Membrane protein; Membrane; RNA; Gene; Receptor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005468325,0.0001107812,0.0003905966,0.00004010834,0.00007594139,0.000004467051,0.0004938861,0.00009741224,0.00004277727],"category_scores_gemma":[0.00009436609,0.00003385455,0.0002382061,0.000336121,0.0003201191,0.00007027859,0.00008199463,0.0001876941,4.822827e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000025802,"about_ca_system_score_gemma":0.00004452412,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000417759,"about_ca_topic_score_gemma":0.001602655,"domain_scores_codex":[0.9983869,0.0003017847,0.0006222911,0.0001041322,0.0003742327,0.0002106796],"domain_scores_gemma":[0.9991525,0.0001248866,0.0005167256,0.00006667837,0.0001025855,0.00003665504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003467035,0.0001362913,0.002656806,0.00004266867,0.00003215791,0.00001474773,0.0001725094,0.0002505061,0.9953399,0.0004119856,0.00001297878,0.0005826949],"study_design_scores_gemma":[0.000665385,0.0005067203,0.2740228,0.0001147456,0.00002277267,0.0001800177,0.0001203621,0.000005218437,0.7190622,0.004984411,0.0002433858,0.00007196503],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961357,0.0004535316,0.00000163457,0.002981963,0.00006750366,0.0001953425,0.00006409293,0.000001918991,0.0000983527],"genre_scores_gemma":[0.9994016,0.0001825796,0.0002049087,0.0001012427,0.00008231736,0.000005263343,8.958087e-7,0.000001022961,0.00002012823],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2762777,"threshold_uncertainty_score":0.1380549,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02533680542743341,"score_gpt":0.2365273395636692,"score_spread":0.2111905341362358,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}