{"id":"W2152081264","doi":"10.1128/jcm.02443-12","title":"Mycobacterial Interspersed Repetitive-Unit–Variable-Number Tandem-Repeat (MIRU-VNTR) Genotyping of Mycobacterium intracellulare for Strain Comparison with Establishment of a PCR-Based Database","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"bioMérieux; Amon G. Carter Foundation","keywords":"Variable number tandem repeat; Biology; Genotyping; Pulsed-field gel electrophoresis; Multiplex polymerase chain reaction; Genotype; Tandem repeat; Genetics; Population; Amplicon; Polymerase chain reaction; Gene; Medicine; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.003796954,0.0003110175,0.001979563,0.0002307375,0.00004878462,0.00002131869,0.0003124258,0.0003836278,0.001100773],"category_scores_gemma":[0.003268518,0.0002230184,0.0004956272,0.0002318086,0.0005317321,0.0002525257,0.0001139805,0.0007844009,0.000006683388],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009020991,"about_ca_system_score_gemma":0.0008623563,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003625418,"about_ca_topic_score_gemma":0.00001506765,"domain_scores_codex":[0.9953474,0.0006554988,0.002761364,0.0003329846,0.0002187839,0.0006839468],"domain_scores_gemma":[0.9929705,0.002413067,0.002165188,0.000489779,0.001383651,0.0005778008],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.02007649,0.002625556,0.3566896,0.0005904803,0.0007499757,0.00002871544,0.0001815588,0.000006563444,0.6160851,0.0001512116,0.00196408,0.0008507136],"study_design_scores_gemma":[0.083999,0.03762759,0.2389925,0.008601204,0.004467753,0.003797825,0.002962406,0.0002632641,0.513827,0.00006667052,0.1038475,0.001547348],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9896277,0.0002837732,0.006663126,0.0004740677,0.001134132,0.0006998312,0.0009609046,0.00001127247,0.0001451525],"genre_scores_gemma":[0.9652748,0.0001042996,0.03252833,0.0003030144,0.001161454,0.00001446553,0.0005408984,0.00003878593,0.00003399873],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1176971,"threshold_uncertainty_score":0.9998124,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07483364884792523,"score_gpt":0.3919459755391528,"score_spread":0.3171123266912276,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}