{"id":"W2152088178","doi":"10.1016/j.protis.2009.09.003","title":"Ultrastructure and 18S rDNA Phylogeny of Apoikia lindahlii comb. nov. (Chrysophyceae) and its Epibiontic Protists, Filos agilis gen. et sp. nov. (Bicosoecida) and Nanos amicus gen. et sp. nov. (Bicosoecida)","year":2009,"lang":"en","type":"article","venue":"Protist","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canadian Institute for Advanced Research; University of British Columbia","funders":"Tula Foundation; University of Wisconsin-Madison; National Science Foundation","keywords":"Biology; Mucilage; Ultrastructure; Botany; Phylogenetics; Ribosomal RNA; Phylogenetic tree; Monophyly; Zoology; Gene; Genetics; Clade","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004201938,0.000677626,0.0007193427,0.0001441657,0.0003346402,0.0001433314,0.0004549466,0.0006097149,0.00005625077],"category_scores_gemma":[0.0001864274,0.0006766258,0.000157639,0.0002263883,0.0004760486,0.00004959277,0.0003972378,0.0005168366,0.00001086663],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003068617,"about_ca_system_score_gemma":0.0001581978,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006445234,"about_ca_topic_score_gemma":0.0001085959,"domain_scores_codex":[0.9968805,0.0002383229,0.0006059061,0.001205433,0.0004079815,0.0006618688],"domain_scores_gemma":[0.9982888,0.0000499479,0.0003873564,0.0006287338,0.0002783068,0.0003668886],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005558001,0.0003877462,0.05410106,0.0006947004,0.0002456741,0.00006855152,0.0004059459,0.00001086705,0.9367239,0.001646379,0.001311236,0.003848121],"study_design_scores_gemma":[0.003780936,0.001564809,0.5643399,0.0002194439,0.0001770982,0.0005338138,0.00006719953,0.0000841334,0.4234555,0.001216272,0.003419068,0.001141823],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884639,0.005085106,0.0005176018,0.0008755596,0.000188035,0.002943133,0.001051906,0.00004657308,0.0008281947],"genre_scores_gemma":[0.9943184,0.0007688751,0.002653157,0.001169795,0.0002167368,0.00006919218,0.0004458091,0.00005747836,0.0003005486],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5132684,"threshold_uncertainty_score":0.9995685,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009014692562002604,"score_gpt":0.2402280988974504,"score_spread":0.2312134063354478,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}