{"id":"W2152379610","doi":"10.1105/tpc.111.083667","title":"PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species ","year":2011,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":309,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"FP7 Food, Agriculture and Fisheries, Biotechnology; Natural Sciences and Engineering Research Council of Canada; Max-Planck-Gesellschaft; University of Toronto","keywords":"Arabidopsis; Biology; Arabidopsis thaliana; Computational biology; Gene; Genome; Identification (biology); Plant species; Genetics; Ecology; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007071634,0.0006003524,0.0003795734,0.003044339,0.0006199042,0.0005604182,0.0004988739,0.0003769425,0.002044479],"category_scores_gemma":[0.001860858,0.0002483314,0.0008647735,0.002164695,0.000258204,0.0007282468,0.0006438571,0.000410846,0.0004759282],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005277062,"about_ca_system_score_gemma":0.0004588666,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002708154,"about_ca_topic_score_gemma":0.004672355,"domain_scores_codex":[0.9995438,0.0001081814,0.00003501835,0.0001885694,0.00007910903,0.00004518092],"domain_scores_gemma":[0.999162,0.0004008599,0.0001204415,0.0001223602,0.0001272673,0.0000671915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004112521,0.0005420335,0.07286152,0.002656593,0.002083367,0.001316475,0.001228275,0.04908866,0.7136605,0.006153901,0.01081648,0.1354797],"study_design_scores_gemma":[0.0002522764,0.001495355,0.4888783,0.0001692018,0.001518159,0.002897444,0.001181068,0.3090199,0.1233486,0.01780924,0.05321575,0.0002146253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8617697,0.0007804577,0.07181285,0.0001342228,0.00007861167,0.0001441429,0.05678714,0.00480635,0.00368652],"genre_scores_gemma":[0.7308996,0.0004771027,0.09501904,0.0000524801,0.0000272767,0.0002817233,0.171836,0.0005304458,0.0008764032],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003044339,"threshold_uncertainty_score":0.006839454,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03744243751071754,"score_gpt":0.2282455542858707,"score_spread":0.1908031167751532,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}