{"id":"W2152415629","doi":"10.1128/iai.01888-14","title":"Host Defense Peptide Resistance Contributes to Colonization and Maximal Intestinal Pathology by Crohn's Disease-Associated Adherent-Invasive Escherichia coli","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Population Health Research Institute; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Crohn's disease; Escherichia coli; Microbiology; Disease; Colonization; Immunology; Crohn disease; Pathology; Genetics; Medicine; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003180295,0.0001447445,0.0001600227,0.00004016329,0.0003522093,0.00005744284,0.00005889847,0.00009640095,0.000005826242],"category_scores_gemma":[0.003846399,0.0001474527,0.00002898987,0.0001569659,0.0002014772,0.00000869174,0.0001960843,0.0001549856,0.000003209494],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003587816,"about_ca_system_score_gemma":0.00005685929,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001562346,"about_ca_topic_score_gemma":0.001381798,"domain_scores_codex":[0.9989102,0.0003863451,0.0001501639,0.000248774,0.0000758943,0.0002285651],"domain_scores_gemma":[0.9992285,0.000104283,0.0000793472,0.0001599188,0.0002949161,0.000133041],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006821298,0.0001926431,0.379156,0.00005863484,0.00009393574,0.000006006921,0.00009682312,0.000004207479,0.612119,0.0001848284,0.007019387,0.0003864421],"study_design_scores_gemma":[0.0008519081,0.0004557522,0.9724213,0.00004348419,0.00002935018,0.000002696361,0.00005561468,0.00005288346,0.01176499,0.0001187048,0.01402327,0.000180056],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959573,0.0007233467,0.00216151,0.0003524758,0.00006793608,0.000293039,0.00003984987,0.00002667107,0.0003778749],"genre_scores_gemma":[0.9979422,0.0006765289,0.000121819,0.0004783789,0.00002845586,0.0000762889,0.000111842,0.00001369942,0.0005507664],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.600354,"threshold_uncertainty_score":0.6012948,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00843298606251094,"score_gpt":0.2453334958683695,"score_spread":0.2369005098058586,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}