{"id":"W2152515586","doi":"10.1128/genomea.01423-14","title":"Draft Genome Sequence of Uncultivated Toluene-Degrading Desulfobulbaceae Bacterium Tol-SR, Obtained by Stable Isotope Probing Using [ 13 C 6 ]Toluene","year":2015,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Genome Alberta; Genome Canada","keywords":"Toluene; Genome; Bacteria; Deltaproteobacteria; Whole genome sequencing; Biology; Metagenomics; Gene; Genetics; Chemistry; Organic chemistry; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006914514,0.0006872466,0.0007015868,0.0001543971,0.0003759011,0.0001650971,0.00072714,0.0001911326,0.0001978221],"category_scores_gemma":[0.00002882136,0.0006557233,0.0001674527,0.001035888,0.0002991073,0.001087675,0.0005919716,0.000225501,0.0003842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001487328,"about_ca_system_score_gemma":0.0001451305,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007646219,"about_ca_topic_score_gemma":0.00002518372,"domain_scores_codex":[0.9953957,0.0001878094,0.0009399708,0.001058626,0.001050584,0.001367379],"domain_scores_gemma":[0.9981703,0.00002702131,0.0004676125,0.0007059557,0.0001271203,0.0005019975],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001706307,0.000312654,0.01013609,0.00004373367,0.0001653781,0.00004882105,0.00230144,0.01654047,0.9696816,0.000002150893,0.00032608,0.0002709468],"study_design_scores_gemma":[0.006613817,0.001079671,0.001335687,0.0001983528,0.0003588437,0.0001300888,0.001566483,0.009710581,0.9425333,0.0001792808,0.03413891,0.002154957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963458,0.0004172664,0.0004140185,0.00006024361,0.000170075,0.001120679,0.0006247578,0.0001264683,0.0007207407],"genre_scores_gemma":[0.9932165,0.00009667541,0.003857326,0.000177934,0.00008945237,0.00006926979,0.001278278,0.0001034791,0.001111087],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03381283,"threshold_uncertainty_score":0.9995894,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03095760298881987,"score_gpt":0.2306614464011524,"score_spread":0.1997038434123326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}