{"id":"W2152575688","doi":"10.1186/1471-2164-15-440","title":"Whole-genome sequencing of Mesorhizobium huakuii 7653R provides molecular insights into host specificity and symbiosis island dynamics","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Specialized Research Fund for the Doctoral Program of Higher Education of China; National Key Research and Development Program of China; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Fundamental Research Funds for the Central Universities; Michael Smith Health Research BC","keywords":"Biology; Mesorhizobium; Genome; Symbiosis; Host (biology); Whole genome sequencing; Computational biology; Evolutionary biology; DNA microarray; Genetics; Gene; Rhizobia; Bacteria; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002838908,0.0002665311,0.0003757504,0.00003754688,0.0001977792,0.00009442628,0.0003780383,0.0001825443,0.00002144378],"category_scores_gemma":[0.0001012371,0.0001328436,0.000130341,0.0002643915,0.0001603809,0.0001268386,0.0002205038,0.0001457874,0.0000212351],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002028029,"about_ca_system_score_gemma":0.00003369563,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006202749,"about_ca_topic_score_gemma":0.004069534,"domain_scores_codex":[0.9984005,0.000137824,0.0004104856,0.0005023509,0.0002148522,0.0003339924],"domain_scores_gemma":[0.9991504,0.000189318,0.0002287127,0.0001738563,0.0001128815,0.0001448443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002125267,0.00003381071,0.01163124,0.00004853532,0.00002145833,0.00000162647,0.0004284229,0.000005116257,0.9862733,0.0007965199,0.00001031972,0.0007283369],"study_design_scores_gemma":[0.0008712854,0.001009455,0.1168646,0.0001117292,0.0002036655,0.0000344327,0.002616836,0.004391874,0.8582747,0.009166376,0.004865507,0.001589536],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981163,0.0004071278,0.000147805,0.0002422509,0.00008458977,0.0003100956,0.00008018603,0.00005547897,0.000556183],"genre_scores_gemma":[0.9974641,0.00002781749,0.002038713,0.0001323458,0.0001423919,0.00001051081,0.0001062422,0.000005674299,0.00007226515],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1279986,"threshold_uncertainty_score":0.5417206,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01186611597999055,"score_gpt":0.1916853489987068,"score_spread":0.1798192330187163,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}