{"id":"W2152575688","doi":"10.1186/1471-2164-15-440","title":"Whole-genome sequencing of Mesorhizobium huakuii 7653R provides molecular insights into host specificity and symbiosis island dynamics","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Specialized Research Fund for the Doctoral Program of Higher Education of China; National Key Research and Development Program of China; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Fundamental Research Funds for the Central Universities; Michael Smith Health Research BC","keywords":"Biology; Mesorhizobium; Genome; Symbiosis; Host (biology); Whole genome sequencing; Computational biology; Evolutionary biology; DNA microarray; Genetics; Gene; Rhizobia; Bacteria; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002018908,0.0004020484,0.0003483446,0.0003289852,0.0002108867,0.0002254271,0.0002020327,0.0003914243,0.001055119],"category_scores_gemma":[0.0002772001,0.0001544432,0.0005003692,0.000449762,0.0001309441,0.0001823692,0.0001914797,0.0003071712,0.0007507227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002891479,"about_ca_system_score_gemma":0.0003243047,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003978689,"about_ca_topic_score_gemma":0.005746998,"domain_scores_codex":[0.9999148,0.000009280754,0.000008119109,0.00003047785,0.00001942818,0.00001797449],"domain_scores_gemma":[0.9998006,0.00004525705,0.00003941808,0.00003954949,0.00003908701,0.00003604657],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001436417,0.00002351012,0.004206507,0.0001528921,0.00002670739,0.0001567622,0.00004634637,0.0001978046,0.9900966,0.0000553919,0.0001231293,0.004770699],"study_design_scores_gemma":[0.00005646468,0.0003550953,0.7367489,0.00008657922,0.0003223119,0.001743337,0.0004028052,0.004726536,0.2448143,0.0003380136,0.01036056,0.00004512718],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860312,0.001144908,0.003391175,0.00009733006,0.00001975804,0.00004032424,0.008070034,0.0001441325,0.001061025],"genre_scores_gemma":[0.950132,0.0009470027,0.01287825,0.0001001166,0.000011112,0.0000531752,0.03401017,0.00008876343,0.001779394],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003978689,"threshold_uncertainty_score":0.007911086,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01186611597999055,"score_gpt":0.1916853489987068,"score_spread":0.1798192330187163,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}