{"id":"W2152591548","doi":"10.1128/jb.00480-08","title":"Genomic O Island 122, Locus for Enterocyte Effacement, and the Evolution of Virulent Verocytotoxin-Producing<i>Escherichia coli</i>","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research; Health Canada; Public Health Agency; Howard Hughes Medical Institute","keywords":"Biology; Pathogenicity island; Genetics; Virulence; Multilocus sequence typing; Locus (genetics); Verocytotoxin; Horizontal gene transfer; Intimin; Population; VTEC; Escherichia coli; Gene; Phylogenetics; Genotype; Enterobacteriaceae","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000221894,0.0001948267,0.0001281781,0.0004783755,0.0001940984,0.0002911865,0.0001689333,0.0002805823,0.0003343098],"category_scores_gemma":[0.0005639126,0.0001094381,0.0001351161,0.0002695984,0.0002489148,0.0001245014,0.0002640077,0.0003281817,0.00007884044],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002773897,"about_ca_system_score_gemma":0.0002228543,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001626087,"about_ca_topic_score_gemma":0.001753553,"domain_scores_codex":[0.9998156,0.00003000416,0.00001445512,0.00004658073,0.00003660828,0.00005682744],"domain_scores_gemma":[0.999643,0.0000643196,0.000128919,0.00002157817,0.00005047887,0.00009170525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006443011,0.0002223695,0.2018803,0.00003388918,0.0000444424,0.0003657708,0.0002912545,0.0005456342,0.7883081,0.0002116247,0.00004785809,0.007404387],"study_design_scores_gemma":[0.00002827717,0.0007617363,0.9621838,0.00001057783,0.0000364569,0.001042986,0.0003822891,0.001506709,0.03334975,0.0001570015,0.0005233894,0.00001699042],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99972,0.0000308768,0.0001253172,0.000005346394,6.748945e-7,0.000003556636,0.00001768524,0.000001346131,0.00009509673],"genre_scores_gemma":[0.999355,0.00003139435,0.0003347207,0.0000110974,0.000002051417,0.000004009507,0.0001349502,0.000001918213,0.0001249967],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001626087,"threshold_uncertainty_score":0.003233194,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01275134226599319,"score_gpt":0.2530421884313033,"score_spread":0.2402908461653101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}