{"id":"W2152591548","doi":"10.1128/jb.00480-08","title":"Genomic O Island 122, Locus for Enterocyte Effacement, and the Evolution of Virulent Verocytotoxin-Producing<i>Escherichia coli</i>","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research; Health Canada; Public Health Agency; Howard Hughes Medical Institute","keywords":"Biology; Pathogenicity island; Genetics; Virulence; Multilocus sequence typing; Locus (genetics); Verocytotoxin; Horizontal gene transfer; Intimin; Population; VTEC; Escherichia coli; Gene; Phylogenetics; Genotype; Enterobacteriaceae","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006038611,0.0001356885,0.0003759488,0.00005206811,0.0001270843,0.000007211804,0.0002054905,0.00009062461,0.000004945117],"category_scores_gemma":[0.0002786999,0.00009072122,0.0001431466,0.00004856507,0.0004576219,0.0000066323,0.0001629658,0.000141618,7.29138e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005635151,"about_ca_system_score_gemma":0.000166265,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002918692,"about_ca_topic_score_gemma":0.00003550255,"domain_scores_codex":[0.998878,0.0001662104,0.0004426734,0.0001825364,0.000105549,0.0002250033],"domain_scores_gemma":[0.9989998,0.00007817896,0.0004254057,0.000194033,0.0002455736,0.00005698236],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003368914,0.00008219752,0.007312419,0.00003963353,0.0002806566,0.000002760703,0.0001952285,0.00002505344,0.9874784,0.00005385092,0.001075184,0.00008568585],"study_design_scores_gemma":[0.05321835,0.01363576,0.3489608,0.0001559088,0.0004267679,0.001281932,0.0009603795,0.0004035057,0.4864444,0.0006935861,0.09298973,0.0008289319],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928796,0.004047192,0.002138611,0.0003235993,0.0002062346,0.0003313077,0.00001767795,0.000001654172,0.00005412861],"genre_scores_gemma":[0.9960651,0.002474726,0.0008397053,0.0001458351,0.0003107241,0.00002208905,0.000004493491,0.00001323246,0.0001241136],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5010341,"threshold_uncertainty_score":0.3699504,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01275134226599319,"score_gpt":0.2530421884313033,"score_spread":0.2402908461653101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}