{"id":"W2152612994","doi":"10.1128/jvi.00022-14","title":"Genome Scale Patterns of Recombination between Coinfecting Vaccinia Viruses","year":2014,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Cancer Foundation","keywords":"Biology; Vaccinia; Recombination; Virology; Genome; Genetics; Viral evolution; Scale (ratio); Gene; Recombinant DNA; Physics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001054732,0.00009822331,0.0004251174,0.0002624333,0.00007044253,0.000005651742,0.0002528982,0.0002167925,0.000439637],"category_scores_gemma":[0.0003360517,0.00008051966,0.0001265147,0.00006935698,0.00007585392,0.0001037409,0.00007127201,0.0004490834,0.000105195],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002763541,"about_ca_system_score_gemma":0.00004526457,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005409119,"about_ca_topic_score_gemma":0.00002547146,"domain_scores_codex":[0.9985179,0.0004949106,0.000547984,0.0001075554,0.0000501158,0.0002815629],"domain_scores_gemma":[0.9986221,0.0004879128,0.0005498813,0.0001384058,0.0001621269,0.00003958181],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000190122,0.00008216533,0.2345989,0.00001651981,0.000155508,0.000002910693,0.0001634066,0.000005187155,0.7542564,0.00007559027,0.0001017007,0.01035162],"study_design_scores_gemma":[0.002057048,0.002135622,0.808661,0.00002411532,0.00006103578,0.000185857,0.00004394235,0.000002412718,0.1677258,0.0007190133,0.0182886,0.00009549715],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971392,0.0003574906,0.001367955,0.0002562877,0.0003384195,0.00005635686,0.00001474139,0.000008002164,0.000461563],"genre_scores_gemma":[0.9995035,0.00008524644,0.00005105158,0.0001214713,0.000132785,9.939998e-7,0.000008422566,0.00001019462,0.00008632345],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5865306,"threshold_uncertainty_score":0.4813716,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01961373039244489,"score_gpt":0.2844346961047463,"score_spread":0.2648209657123013,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}