{"id":"W2152821544","doi":"10.1186/1471-2148-8-229","title":"Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni","year":2008,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Biological Sciences; Public Health Agency of Canada","funders":"Health Canada; Genomic Health","keywords":"Multilocus sequence typing; Biology; Genetics; Campylobacter jejuni; Locus (genetics); Typing; Whole genome sequencing; Population; Genome; Comparative genomic hybridization; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003163639,0.0002095853,0.0006652637,0.00004570819,0.000116467,0.000001655567,0.0003258421,0.0002548288,0.0002501733],"category_scores_gemma":[0.00004508645,0.0001060424,0.0002197548,0.000183413,0.0008140439,0.00009053991,0.0001466876,0.0001300814,0.000007914307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008314423,"about_ca_system_score_gemma":0.00008089777,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000670156,"about_ca_topic_score_gemma":0.0004318292,"domain_scores_codex":[0.9978356,0.0006023508,0.0007858046,0.0003990792,0.00007426424,0.0003028996],"domain_scores_gemma":[0.9982928,0.0006080625,0.0006807878,0.0001301348,0.0002150786,0.00007315038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006108535,0.0001227751,0.5369323,0.000008086445,0.0000350252,2.751793e-7,0.0000390792,0.0003314381,0.4621812,0.0001410118,0.00002423586,0.0001234067],"study_design_scores_gemma":[0.0002893177,0.0005314002,0.9895659,0.00001184146,0.00001936323,0.00002746321,0.00006595394,0.004885162,0.004021341,0.000243002,0.000175066,0.0001641519],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979315,0.0009185324,0.0003250349,0.00003550348,0.0001689564,0.000289023,0.0002228145,0.00002150126,0.00008717953],"genre_scores_gemma":[0.9966418,0.000178164,0.002637982,0.00002838272,0.0000861887,0.00001462065,0.0003904432,0.000001670122,0.00002071951],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4581599,"threshold_uncertainty_score":0.4324283,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2140462448517472,"score_gpt":0.3628809555080597,"score_spread":0.1488347106563125,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}