{"id":"W2152821544","doi":"10.1186/1471-2148-8-229","title":"Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni","year":2008,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Biological Sciences; Public Health Agency of Canada","funders":"Health Canada; Genomic Health","keywords":"Multilocus sequence typing; Biology; Genetics; Campylobacter jejuni; Locus (genetics); Typing; Whole genome sequencing; Population; Genome; Comparative genomic hybridization; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004168339,0.0001738718,0.0001861927,0.0007830689,0.0001627463,0.0002778627,0.0001952911,0.000381363,0.0006853143],"category_scores_gemma":[0.00100357,0.0001086967,0.0001199092,0.0004382229,0.0002279244,0.0001779983,0.0002425178,0.0003053067,0.0001336817],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001861682,"about_ca_system_score_gemma":0.0001330503,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006047817,"about_ca_topic_score_gemma":0.0007534365,"domain_scores_codex":[0.9996871,0.00005596249,0.00001806804,0.00009912359,0.00009330075,0.00004639028],"domain_scores_gemma":[0.9992748,0.0002582195,0.0002099264,0.00005647382,0.0001162018,0.0000844469],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000116768,0.0000372915,0.01960702,0.00004061969,0.00001740282,0.00006352889,0.00006304814,0.0001147541,0.9768331,0.00002802851,0.00002375468,0.003054688],"study_design_scores_gemma":[0.00001308239,0.0009158988,0.6409943,0.00001633875,0.00009740068,0.001823429,0.0003174951,0.004181398,0.3506855,0.000171223,0.0007657701,0.00001812382],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972862,0.0001949869,0.001986746,0.00002413796,0.000002910426,0.00001265935,0.0001817337,0.0000208911,0.0002897899],"genre_scores_gemma":[0.9966893,0.0000630191,0.002777975,0.00002510243,0.000004383755,0.00001562369,0.0003069767,0.000004666906,0.000113108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007830689,"threshold_uncertainty_score":0.002292573,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2140462448517472,"score_gpt":0.3628809555080597,"score_spread":0.1488347106563125,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}