{"id":"W2152934249","doi":"10.1128/jcm.05122-11","title":"Five-Year Outbreak of Community- and Hospital-Acquired Mycobacterium porcinum Infections Related to Public Water Supplies","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"Amon G. Carter Foundation","keywords":"Outbreak; Pulsed-field gel electrophoresis; rpoB; Biology; Sputum; Microbiology; Veterinary medicine; Mycobacterium; Genotype; Virology; Medicine; Tuberculosis; Bacteria; Pathology; 16S ribosomal RNA; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001918008,0.0001502691,0.0009230133,0.0002864237,0.00008318729,0.00001432132,0.0002098937,0.0003139432,0.001047117],"category_scores_gemma":[0.002242713,0.00009594894,0.0002811637,0.0001359751,0.0004494931,0.0001318091,0.0002635162,0.0007429611,0.00006964707],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002313723,"about_ca_system_score_gemma":0.0001329699,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008903913,"about_ca_topic_score_gemma":0.00002156327,"domain_scores_codex":[0.9973566,0.0006332064,0.001448264,0.0001314765,0.00007135305,0.0003591006],"domain_scores_gemma":[0.9974555,0.0007213843,0.0003813684,0.0003224194,0.0006524133,0.0004669353],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001292375,0.001978563,0.8383524,0.00008889323,0.0005080401,0.00004134918,0.001963089,7.739725e-8,0.1440898,0.0001183212,0.01043733,0.00112974],"study_design_scores_gemma":[0.003895659,0.01434251,0.938253,0.000122073,0.0001678398,0.0007315031,0.0006244718,2.872113e-7,0.0160668,0.0004512693,0.02517904,0.0001655583],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923539,0.00006552166,0.0000101992,0.005811747,0.0006551224,0.0002114386,0.00003924001,0.00001288183,0.0008399104],"genre_scores_gemma":[0.9979466,0.0003558179,0.0005832478,0.0007124435,0.0001314929,0.000004040406,0.0000361868,0.00001721898,0.0002129732],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.128023,"threshold_uncertainty_score":0.9998661,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05378701527932349,"score_gpt":0.3475818726404316,"score_spread":0.2937948573611081,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}