{"id":"W2152973363","doi":"10.1016/j.jmb.2005.02.072","title":"Integrated Pseudogene Annotation for Human Chromosome 22: Evidence for Transcription","year":2005,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University; University of Toronto","funders":"National Institutes of Health; National Human Genome Research Institute; National Aeronautics and Space Administration","keywords":"Pseudogene; Biology; Genetics; Computational biology; Intergenic region; Gene; Synteny; DNA microarray; Chromosome; Genome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003662488,0.000831796,0.0007300972,0.001492463,0.000843555,0.0008495617,0.0006666642,0.0008054981,0.005719344],"category_scores_gemma":[0.001800991,0.0003943173,0.0007812544,0.0009607235,0.0005313192,0.0003675918,0.0006430298,0.001034106,0.002457382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005170149,"about_ca_system_score_gemma":0.001309525,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002729169,"about_ca_topic_score_gemma":0.005778679,"domain_scores_codex":[0.9995272,0.00007175715,0.0000327649,0.000172498,0.0001311467,0.00006463551],"domain_scores_gemma":[0.9981111,0.0006437449,0.0002181909,0.0003483607,0.00036547,0.0003130497],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001970197,0.00009076225,0.008637383,0.0005515715,0.00008998724,0.002440973,0.0005021831,0.0007090334,0.9613743,0.001944292,0.001322587,0.02036681],"study_design_scores_gemma":[0.0003624251,0.0009343509,0.184322,0.0003180089,0.001055983,0.009154405,0.0007680189,0.01678493,0.7212893,0.004793668,0.06005538,0.0001614278],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9197878,0.003343641,0.05291513,0.000739246,0.000394917,0.0001448871,0.01413546,0.001687147,0.006851751],"genre_scores_gemma":[0.909828,0.001095375,0.04229028,0.0004760497,0.0002082982,0.0001419367,0.03735525,0.0006065336,0.007998216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005719344,"threshold_uncertainty_score":0.01913309,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04047283847294898,"score_gpt":0.3324441665361326,"score_spread":0.2919713280631837,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}