{"id":"W2152973363","doi":"10.1016/j.jmb.2005.02.072","title":"Integrated Pseudogene Annotation for Human Chromosome 22: Evidence for Transcription","year":2005,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University; University of Toronto","funders":"National Institutes of Health; National Human Genome Research Institute; National Aeronautics and Space Administration","keywords":"Pseudogene; Biology; Genetics; Computational biology; Intergenic region; Gene; Synteny; DNA microarray; Chromosome; Genome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003518172,0.0001419563,0.0002238056,0.00007350079,0.0000823134,0.00001238503,0.0001821048,0.0001560896,0.000004761531],"category_scores_gemma":[0.0001750146,0.0001231795,0.000255819,0.00004915728,0.00006327622,0.000002306126,0.00001881764,0.00006017022,6.219572e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002576177,"about_ca_system_score_gemma":0.00007651433,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002998448,"about_ca_topic_score_gemma":0.00001129255,"domain_scores_codex":[0.999066,0.0000591137,0.000418144,0.0002001991,0.00005465989,0.0002018767],"domain_scores_gemma":[0.9990638,0.0000302462,0.0002690036,0.0001352282,0.0004462243,0.0000555084],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002694464,0.00005347641,0.0001447439,0.00001928743,0.0001501151,6.804208e-7,0.00003865821,0.0002414262,0.9907001,0.0004367966,0.0004212304,0.007524016],"study_design_scores_gemma":[0.001492792,0.003119566,0.0005054598,0.0000273556,0.000124467,0.00005361241,0.00003955635,0.00007930735,0.9381989,0.001829549,0.05435172,0.0001777364],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8318685,0.005303544,0.1617647,0.0005258399,0.0002033232,0.0002750646,0.00004340415,0.000001528322,0.00001405075],"genre_scores_gemma":[0.9756897,0.000362278,0.02287464,0.0003184527,0.0005718921,0.00003534231,0.00007315202,0.00001985811,0.00005468584],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1438212,"threshold_uncertainty_score":0.5023115,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04047283847294898,"score_gpt":0.3324441665361326,"score_spread":0.2919713280631837,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}