{"id":"W2153124929","doi":"10.1371/journal.pone.0019816","title":"Targeted Assembly of Short Sequence Reads","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; BC Cancer Agency","funders":"BC Cancer Agency","keywords":"Sequence (biology); Bottleneck; Computational biology; Sequence assembly; Alignment-free sequence analysis; Set (abstract data type); Computer science; Sequence analysis; Consensus sequence; Locus (genetics); Genetics; Biology; Sequence alignment; DNA sequencing; Data mining; Base sequence; DNA; Gene; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001343281,0.001469284,0.001964314,0.001896162,0.0008034325,0.001474618,0.001361839,0.001026566,0.00521867],"category_scores_gemma":[0.004072438,0.0009184066,0.002171692,0.001716522,0.0004244189,0.0007143176,0.001860376,0.002022381,0.009776492],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004810716,"about_ca_system_score_gemma":0.0008962452,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009885555,"about_ca_topic_score_gemma":0.001813635,"domain_scores_codex":[0.9976538,0.0003744851,0.0002658784,0.0007558396,0.0007297163,0.0002201854],"domain_scores_gemma":[0.9977661,0.0004677494,0.0002457853,0.0005471325,0.0008051958,0.0001680446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000456797,0.0000813521,0.001161563,0.0009539825,0.0001693783,0.0006825196,0.0004297358,0.003475287,0.9017078,0.003559427,0.009761391,0.07756064],"study_design_scores_gemma":[0.0001025477,0.0007396389,0.004742808,0.0001842733,0.0002343062,0.001340825,0.0002595924,0.04223374,0.7755606,0.005866449,0.1685955,0.0001397549],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.04802142,0.001852266,0.919274,0.0001833625,0.0007728036,0.001525665,0.01119311,0.01036616,0.006811089],"genre_scores_gemma":[0.1216276,0.002341533,0.8029811,0.0006457,0.0002328283,0.00191701,0.05195314,0.003684106,0.01461694],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.00521867,"threshold_uncertainty_score":0.01745814,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08269675614424299,"score_gpt":0.2414505954453926,"score_spread":0.1587538393011496,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}