{"id":"W2153580010","doi":"10.1152/physiolgenomics.00089.2009","title":"Gene expression endpoints following chronic waterborne copper exposure in a genomic model organism, the zebrafish, Danio rerio","year":2009,"lang":"en","type":"article","venue":"Physiological Genomics","topic":"Environmental Toxicology and Ecotoxicology","field":"Environmental Science","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Zebrafish; Gene; Gene expression; Danio; Metallothionein; Transcriptome; Microarray; Microarray analysis techniques; Downregulation and upregulation; Gene expression profiling; Molecular biology; Copper toxicity; Toxicogenomics; Toxicity; Genetics; Chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001129394,0.0003836102,0.0003152676,0.0002609006,0.000224587,0.0002060412,0.000168309,0.0003046185,0.0009508509],"category_scores_gemma":[0.0001565774,0.0001616225,0.0002954575,0.0002734809,0.0004109308,0.0001700019,0.0002578544,0.0003882012,0.0001954183],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005591377,"about_ca_system_score_gemma":0.0003713615,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004284963,"about_ca_topic_score_gemma":0.009421125,"domain_scores_codex":[0.9998506,0.000009797184,0.000009827035,0.00006558442,0.0000364733,0.00002769096],"domain_scores_gemma":[0.999869,0.00001902686,0.00004651258,0.000007802942,0.00003641957,0.000021183],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000796555,0.000007674219,0.0007820182,0.00003673942,0.00000507916,0.00002515092,0.00003228528,0.0000467727,0.9984793,0.00001595178,0.00003227179,0.0004571087],"study_design_scores_gemma":[0.00001802361,0.001063048,0.08771282,0.00001437461,0.00008881046,0.0001786313,0.000252153,0.0007520334,0.9080288,0.00008906185,0.001777711,0.00002454919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926003,0.0008096558,0.002767295,0.00009117231,0.00002874846,0.00005140709,0.002565294,0.00009707482,0.0009890849],"genre_scores_gemma":[0.9833722,0.001163694,0.005682621,0.0002391649,0.00001496591,0.0002969325,0.003116739,0.00005602101,0.006057634],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004284963,"threshold_uncertainty_score":0.008520067,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01549711437412632,"score_gpt":0.2209496745297977,"score_spread":0.2054525601556714,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}