{"id":"W2153768827","doi":"10.1111/j.1365-294x.2011.05109.x","title":"Gene genealogies reveal cryptic species and host preferences for the pine fungal pathogen<i>Grosmannia clavigera</i>","year":2011,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Forest Insect Ecology and Management","field":"Environmental Science","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Alberta; Genome British Columbia","keywords":"Dendroctonus; Biology; Mountain pine beetle; Pinus contorta; Bark beetle; Ecology; Host (biology); Phylogenetic tree; Lineage (genetic); Bark (sound); Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002655397,0.0001574474,0.0001677527,0.00002747307,0.0002740802,0.00001746382,0.0003167489,0.0001148947,0.0009332295],"category_scores_gemma":[0.00005184049,0.0001152322,0.00005597881,0.000083789,0.0005594561,0.00006175927,0.0003540398,0.0001016137,0.000127888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004275944,"about_ca_system_score_gemma":0.00001034827,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006712289,"about_ca_topic_score_gemma":0.0007192474,"domain_scores_codex":[0.9989253,0.00007859291,0.0001826482,0.0003465129,0.00008595704,0.0003809949],"domain_scores_gemma":[0.9994901,0.0000961882,0.00007753284,0.0002729656,0.000009853341,0.0000533593],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005461731,0.0006329839,0.6215673,0.0001003729,0.0004861276,0.0004893641,0.003072115,0.0007065017,0.3243311,0.01562428,0.02574106,0.006702542],"study_design_scores_gemma":[0.0003313995,0.0006204361,0.9812406,0.000001436601,0.00007134497,0.00002955157,0.00009378669,0.0001117899,0.006334332,0.005436469,0.005563082,0.0001657613],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919021,0.0003448543,0.002107652,0.0003204049,0.0003216037,0.0006704837,0.00001499837,0.00003864919,0.004279321],"genre_scores_gemma":[0.9933606,0.0001621336,0.003696601,0.00155048,0.00002960256,0.0002658644,0.000008506467,0.00001316788,0.0009130021],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3596733,"threshold_uncertainty_score":0.99998,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0202981425728612,"score_gpt":0.2115101404916949,"score_spread":0.1912119979188337,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}