{"id":"W2154133707","doi":"10.1111/mmi.12833","title":"<scp>PhoR</scp> autokinase activity is controlled by an intermediate in wall teichoic acid metabolism that is sensed by the intracellular <scp>PAS</scp> domain during the <scp>PhoPR</scp>‐mediated phosphate limitation response of <scp><i>B</i></scp><i>acillus subtilis</i>","year":2014,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Science Foundation Ireland","keywords":"Biology; Intracellular; Phosphate; Phosphorylation; Teichoic acid; Biochemistry; Metabolism; Cell biology; Cell wall","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.003354978,0.001310407,0.001690672,0.0003824207,0.000402007,0.0001588726,0.001847333,0.00245618,0.000009556387],"category_scores_gemma":[0.004383864,0.001011373,0.0006750242,0.0007972218,0.001416095,0.00004665317,0.0008390233,0.001364379,0.00005072668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001347312,"about_ca_system_score_gemma":0.000261654,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001455082,"about_ca_topic_score_gemma":0.0001293458,"domain_scores_codex":[0.9901949,0.004061209,0.00139334,0.001982853,0.0003725514,0.001995149],"domain_scores_gemma":[0.9938402,0.001891069,0.001374815,0.002136132,0.0003966135,0.0003611726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002859027,0.0004489946,0.0005044946,0.00006183551,0.0006189363,0.00004550168,0.001549482,0.00003815333,0.9876153,0.00001788945,0.00849905,0.0003144094],"study_design_scores_gemma":[0.006946654,0.0008160743,0.001642547,0.00003280339,0.0002373053,0.0001179564,0.0008314814,0.0003026893,0.8335614,0.0001069105,0.1552599,0.0001443368],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9844118,0.009875661,0.001106748,0.0006370136,0.0006245199,0.001946403,0.001185723,0.0001108267,0.0001012636],"genre_scores_gemma":[0.9911402,0.00174032,0.0002606311,0.00361921,0.0001632167,0.0002799082,0.001410408,0.0002039424,0.001182128],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.154054,"threshold_uncertainty_score":0.9999647,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004707354592685149,"score_gpt":0.1949261419132529,"score_spread":0.1902187873205677,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}