{"id":"W2154361878","doi":"10.1098/rspb.2006.3638","title":"The evolutionary emergence of pandemic influenza","year":2006,"lang":"en","type":"article","venue":"Proceedings of the Royal Society B Biological Sciences","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; Queen's University; Canada Research Chairs","keywords":"Reassortment; Pandemic; Influenza A virus subtype H5N1; Biology; Outbreak; Virology; Viral phylodynamics; Human mortality from H5N1; Virus; Transmission (telecommunications); Public health; Influenza A virus; Viral evolution; Strain (injury); Phylogenetics; Disease; Infectious disease (medical specialty); Genome; Coronavirus disease 2019 (COVID-19); Genetics; Medicine; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001493654,0.0003118335,0.000464493,0.0004337706,0.0005995499,0.00100463,0.0006681361,0.001122958,0.001596709],"category_scores_gemma":[0.007928184,0.0003258304,0.0006860374,0.0001962885,0.0009147091,0.001524664,0.001100625,0.001081836,0.0002635701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009055768,"about_ca_system_score_gemma":0.000657549,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002890928,"about_ca_topic_score_gemma":0.001962076,"domain_scores_codex":[0.999342,0.000291969,0.00002683993,0.0001432469,0.0001134927,0.00008239536],"domain_scores_gemma":[0.9986905,0.0006080906,0.0002768238,0.0001105221,0.0001594641,0.0001546865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","study_design_scores_codex":[0.0001729873,0.00009935161,0.05733401,0.000257817,0.0002247971,0.00105049,0.0007195093,0.5545875,0.01032697,0.332087,0.003357309,0.03978232],"study_design_scores_gemma":[0.0000318708,0.0001218247,0.01627977,0.00004187028,0.00004667588,0.0005954609,0.0002759641,0.8301948,0.0006279139,0.1467855,0.004950202,0.00004810731],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7131874,0.001339025,0.2569464,0.005035193,0.0001814122,0.000070476,0.0002124075,0.0001904141,0.02283717],"genre_scores_gemma":[0.9890956,0.0007060308,0.007907329,0.0002689663,0.00005199229,0.00002780196,0.000106554,0.00002163396,0.001814185],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002890928,"threshold_uncertainty_score":0.007899284,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09112966810406374,"score_gpt":0.3564171510534725,"score_spread":0.2652874829494088,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}