{"id":"W2154648483","doi":"10.1104/pp.108.127787","title":"Analysis of Site Frequency Spectra from Arabidopsis with Context-Dependent Corrections for Ancestral Misinference","year":2008,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"","keywords":"Arabidopsis; Biology; Context (archaeology); Genetics; Arabidopsis thaliana; Evolutionary biology; Single-nucleotide polymorphism; Mutant; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004559526,0.0001361206,0.0003436044,0.00006306723,0.00007795733,0.0000034843,0.0001383834,0.00009514112,0.00007375916],"category_scores_gemma":[0.00002863296,0.0001111872,0.0001630011,0.0001148145,0.00009523197,0.00000369199,0.00001742173,0.00004630327,0.000003817295],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006697212,"about_ca_system_score_gemma":0.00005696702,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005632114,"about_ca_topic_score_gemma":0.0007258244,"domain_scores_codex":[0.9991472,0.0000484146,0.0001855906,0.0003539771,0.00007392685,0.0001908974],"domain_scores_gemma":[0.9993962,0.00006693751,0.0001301067,0.00029313,0.00006661304,0.00004700258],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003193262,0.00006780522,0.00960849,0.000005429165,0.0009310564,0.000003178658,0.00007764981,0.0002588973,0.9882585,0.00008693585,0.00005329595,0.0003294417],"study_design_scores_gemma":[0.0004971848,0.0007880646,0.06117014,0.00001178458,0.000509517,0.00001463603,0.00008732185,0.000212962,0.9355794,0.0004387805,0.0004489945,0.00024126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881777,0.0003536916,0.009853885,0.00001703826,0.00009995828,0.0001716861,0.001172669,0.000009348644,0.0001440274],"genre_scores_gemma":[0.9966643,0.0002289629,0.001846574,0.00006494045,0.00009567304,0.00005040183,0.0009516972,0.000009419755,0.00008801972],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05267914,"threshold_uncertainty_score":0.4534083,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02104131746087375,"score_gpt":0.2320837642581376,"score_spread":0.2110424467972639,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}