{"id":"W2154865352","doi":"10.1513/annalsats.201310-351oc","title":"The Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly","year":2014,"lang":"en","type":"article","venue":"Annals of the American Thoracic Society","topic":"Pediatric health and respiratory diseases","field":"Health Professions","cited_by":216,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research","keywords":"Microbiome; Respiratory tract; Medicine; Streptococcus pneumoniae; Respiratory tract infections; Population; Immune system; Respiratory system; Immunology; Streptococcus salivarius; Upper respiratory tract infection; Anterior nares; Streptococcus; Physiology; Internal medicine; Microbiology; Biology; Bacteria; Staphylococcus aureus; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006856683,0.0001897298,0.0004464395,0.00005099881,0.001103356,0.00001102102,0.002194622,0.0001143709,0.00001085241],"category_scores_gemma":[0.0005279966,0.00007253463,0.0006586785,0.001305416,0.002271409,0.00006554431,0.0002102744,0.001174381,0.000002288468],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001998987,"about_ca_system_score_gemma":0.0005772531,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002395835,"about_ca_topic_score_gemma":0.0005369012,"domain_scores_codex":[0.9891163,0.008692452,0.0009372358,0.0001432855,0.0005401581,0.0005706284],"domain_scores_gemma":[0.9915224,0.005462409,0.001313609,0.00144115,0.0002036898,0.00005673324],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002185941,0.0004363313,0.9151219,0.0004121781,0.00005428319,3.23299e-7,0.03092737,0.00002295754,0.0002185171,0.0004220724,0.03701856,0.01514691],"study_design_scores_gemma":[0.0002934886,0.0002499291,0.8607622,0.0001926955,0.0000403757,6.5402e-7,0.09637957,0.00001050119,0.0001164822,0.0008349098,0.0410133,0.0001059307],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9828702,0.001496094,0.000003613828,0.01396492,0.0001559069,0.0008198089,0.00008240216,0.000008694072,0.0005984],"genre_scores_gemma":[0.9681152,0.0008756367,0.00001594505,0.03067038,0.0001948202,0.00008637344,0.000001488338,0.00001572014,0.00002443032],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0654522,"threshold_uncertainty_score":0.8486233,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1153876733091844,"score_gpt":0.4590710327101208,"score_spread":0.3436833594009364,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}