{"id":"W2154998018","doi":"10.1128/jb.185.20.6042-6050.2003","title":"Regulation of Expression of the 2-Deoxy- <scp>d</scp> -Ribose Utilization Regulon, <i>deoQKPX</i> , from <i>Salmonella enterica</i> Serovar Typhimurium","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Operon; Promoter; Repressor; Regulon; Salmonella enterica; Gene; Genetics; Transcription (linguistics); lac operon; Molecular biology; Escherichia coli; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005213017,0.00014897,0.0004164912,0.00008677848,0.00006765167,0.00001309226,0.0002717988,0.0001925565,0.0001721488],"category_scores_gemma":[0.0004922868,0.00009788085,0.0001473572,0.0001928772,0.000162687,0.0002374051,0.00005515765,0.0001595442,0.00000440185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003430624,"about_ca_system_score_gemma":0.00008402899,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001845061,"about_ca_topic_score_gemma":0.000005420571,"domain_scores_codex":[0.9980475,0.0004858137,0.0008532383,0.0001790655,0.0002598887,0.0001744672],"domain_scores_gemma":[0.997346,0.0002341426,0.001663074,0.0003390749,0.0003617082,0.0000559356],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008368838,0.00004818909,0.00443481,0.00002231803,0.00001225869,9.59362e-7,0.0003527229,0.0001744121,0.99237,0.0001742329,0.002214459,0.0001119522],"study_design_scores_gemma":[0.0005049445,0.0002275006,0.0728,0.00009666664,0.00004705408,0.00006342748,0.0001353192,0.00001524413,0.9171473,0.00188107,0.007040608,0.00004080647],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994261,0.0002901396,0.002489844,0.00004791896,0.002104157,0.0001019955,0.00002324136,0.00000870483,0.0006730262],"genre_scores_gemma":[0.9974583,0.00007953682,0.001985106,0.00009279144,0.0002076514,0.000001307185,0.000009084129,0.00001520942,0.0001509866],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07522264,"threshold_uncertainty_score":0.3991465,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01516655865727424,"score_gpt":0.2262947043409465,"score_spread":0.2111281456836722,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}