{"id":"W2155220273","doi":"10.1093/molbev/msn235","title":"Candidate Genes and Adaptive Radiation: Insights from Transcriptional Adaptation to the Limnetic Niche among Coregonine Fishes (Coregonus spp., Salmonidae)","year":2008,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Coregonus clupeaformis; Limnetic zone; Coregonus; Adaptive radiation; Salvelinus; Evolutionary biology; Parallel evolution; Candidate gene; Genetics; Gene; Ecology; Phylogenetic tree; Trout; Fishery","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005036256,0.0001540824,0.0001215717,0.00004837231,0.0003242523,0.00001391504,0.00009273085,0.00021415,0.00001417527],"category_scores_gemma":[0.0000267678,0.0001268377,0.00004318152,0.00009109032,0.000233351,0.000008595051,0.00005588034,0.00008493307,0.000005892725],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001406457,"about_ca_system_score_gemma":0.00003947893,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00045032,"about_ca_topic_score_gemma":0.0005829616,"domain_scores_codex":[0.9991221,0.0001357601,0.0001479267,0.0003627368,0.00008181471,0.000149596],"domain_scores_gemma":[0.9996007,0.00001341925,0.00006430328,0.0001659789,0.00006846254,0.00008714976],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008514372,0.00006169314,0.286523,0.00001293869,0.0003615288,0.00002251608,0.002644301,0.009500015,0.6844261,0.004719566,0.00158025,0.009296703],"study_design_scores_gemma":[0.0006448936,0.0003559068,0.9778305,0.00000746096,0.00006285177,0.00003935594,0.0002237547,0.001605626,0.0106866,0.00159695,0.0067128,0.0002333197],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9494546,0.008015031,0.04161566,0.0003900026,0.0001672651,0.0002134482,0.00006318322,0.00001051502,0.00007031214],"genre_scores_gemma":[0.9973053,0.0005150413,0.0009806941,0.0003540384,0.0001512171,0.000015927,0.000569962,0.000008495347,0.00009931838],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6913075,"threshold_uncertainty_score":0.5172291,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01147519984563821,"score_gpt":0.2106329239891884,"score_spread":0.1991577241435502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}