{"id":"W2155405213","doi":"10.1111/j.1467-8659.2009.01710.x","title":"Pathline: A Tool For Comparative Functional Genomics","year":2010,"lang":"en","type":"article","venue":"Computer Graphics Forum","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Broad Institute; Computing Research Association; National Science Foundation","keywords":"ENCODE; Genomics; Visualization; Comparative genomics; Functional genomics; Data visualization; Computer science; Computational biology; Streamlines, streaklines, and pathlines; Biology; Data science; Genome; Data mining; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00383523,0.002478201,0.001744083,0.005326066,0.001085411,0.002302119,0.003920413,0.001583692,0.04927348],"category_scores_gemma":[0.007095239,0.001751947,0.002217455,0.004094786,0.001004405,0.003728809,0.003446805,0.003098906,0.008543426],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008854977,"about_ca_system_score_gemma":0.00130599,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001680812,"about_ca_topic_score_gemma":0.001189002,"domain_scores_codex":[0.9987047,0.0004464726,0.0001457082,0.0002498904,0.0003521463,0.0001010818],"domain_scores_gemma":[0.9954724,0.003060001,0.0002457779,0.0004505999,0.0005588507,0.0002124746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001856448,0.0004300154,0.00248124,0.003729143,0.0006166339,0.002096699,0.001836832,0.02272844,0.05723799,0.06193198,0.4341981,0.4108566],"study_design_scores_gemma":[0.001468098,0.0004117831,0.003747005,0.0008233047,0.000253859,0.002131011,0.000490155,0.2629741,0.05822363,0.1175864,0.5514171,0.0004736287],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.002236118,0.0002262838,0.8567547,0.0002726632,0.0001678298,0.0002121115,0.009408452,0.1285078,0.002214117],"genre_scores_gemma":[0.02681961,0.0004429769,0.9295278,0.0002287854,0.00007203014,0.002125033,0.01731856,0.02147858,0.001986716],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.04927348,"threshold_uncertainty_score":0.1648362,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01278719854283197,"score_gpt":0.2319105585564688,"score_spread":0.2191233600136368,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}