{"id":"W2155448955","doi":"10.1128/jb.185.2.489-495.2003","title":"Identification of Secretion Determinants of the<i>Bordetella pertussis</i>BrkA Autotransporter","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Biology; Bacterial outer membrane; Bordetella pertussis; Secretion; Escherichia coli; Signal peptide; Peptide sequence; Biochemistry; Effector; Cyclic nucleotide-binding domain; Bordetella; Amino acid; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006557698,0.0002492511,0.0001839113,0.0001549137,0.0001342796,0.0003789107,0.0001239055,0.0002809589,0.0004374232],"category_scores_gemma":[0.0001419366,0.0001546955,0.000341624,0.00013301,0.0001368109,0.000170971,0.0002611174,0.0006546034,0.0004290876],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004022593,"about_ca_system_score_gemma":0.0002655089,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001587622,"about_ca_topic_score_gemma":0.001607429,"domain_scores_codex":[0.9998975,0.00001451319,0.000009363743,0.00001354027,0.00003461423,0.00003041574],"domain_scores_gemma":[0.9998699,0.0000205309,0.00004027118,0.00001119002,0.00001727501,0.0000407279],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003151896,0.00001448135,0.0002806564,0.0000082982,0.00000102415,0.00004835543,0.00001591976,0.00001938339,0.9992084,0.00004277285,0.00001273212,0.0003163179],"study_design_scores_gemma":[0.00002507405,0.0002143347,0.03810923,0.00001333937,0.00002456728,0.001231749,0.000195661,0.001110393,0.9564175,0.00007925614,0.00256826,0.00001064253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973793,0.0002169996,0.001515833,0.00007136197,0.000008764778,0.00001667888,0.0001744838,0.00002269842,0.0005938659],"genre_scores_gemma":[0.9945384,0.0002646659,0.002971706,0.00009355286,0.000007769356,0.00001386495,0.001014022,0.00001987446,0.001076186],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001587622,"threshold_uncertainty_score":0.003156781,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006980321453596829,"score_gpt":0.229789868855933,"score_spread":0.2228095474023362,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}