{"id":"W2155448955","doi":"10.1128/jb.185.2.489-495.2003","title":"Identification of Secretion Determinants of the<i>Bordetella pertussis</i>BrkA Autotransporter","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Biology; Bacterial outer membrane; Bordetella pertussis; Secretion; Escherichia coli; Signal peptide; Peptide sequence; Biochemistry; Effector; Cyclic nucleotide-binding domain; Bordetella; Amino acid; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003630581,0.000105548,0.0002823501,0.00006544538,0.00002644804,0.000004095433,0.0002629275,0.0003051494,0.00002771919],"category_scores_gemma":[0.0001189441,0.00007356685,0.0001836598,0.00008396085,0.0002128479,0.000003909548,0.00003209687,0.0001077076,6.371134e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007459425,"about_ca_system_score_gemma":0.0001139383,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002995296,"about_ca_topic_score_gemma":0.00001087051,"domain_scores_codex":[0.9987396,0.0001379731,0.0007742558,0.0001305317,0.00008411604,0.0001335143],"domain_scores_gemma":[0.9984525,0.00001013226,0.0009864471,0.0002876681,0.0002315094,0.00003172225],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009254938,0.00005230115,0.01844028,0.00002154518,0.00003769852,0.000001062749,0.00002696483,0.000007689531,0.9796746,0.00007330145,0.00002249474,0.001549513],"study_design_scores_gemma":[0.000340454,0.0004900448,0.1201976,0.00001979063,0.00003908759,0.0001606857,0.00002197985,0.000007216243,0.8709992,0.0001239267,0.007531392,0.00006863085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984586,0.000294493,0.0003146236,0.00009024731,0.0007032461,0.00007762667,0.00001513778,0.000001249979,0.00004478206],"genre_scores_gemma":[0.9991446,0.0003966811,0.000258144,0.00004152726,0.00007550271,0.000001165689,0.000004076634,0.00001016982,0.00006815828],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1086754,"threshold_uncertainty_score":0.2999969,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006980321453596829,"score_gpt":0.229789868855933,"score_spread":0.2228095474023362,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}