{"id":"W2155634401","doi":"10.1094/phyto-12-10-0334","title":"Sequence Variability, Recombination Analysis, and Specific Detection of the W Strain of <i>Plum pox virus</i>","year":2011,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"European Social Fund; Mustafa Kemal Üniversitesi; FP7 Food, Agriculture and Fisheries, Biotechnology; Institut National de la Recherche Agronomique; European Commission; Vedecká Grantová Agentúra MŠVVaŠ SR a SAV; Agentúra na Podporu Výskumu a Vývoja; Slovenská Akadémia Vied; State Education Development Agency Republic of Latvia; Canadian Food Inspection Agency","keywords":"Biology; Potyviridae; Potyvirus; Recombination; Genome; Strain (injury); Virology; Pox virus; Genetics; Polymerase chain reaction; Serology; Primer (cosmetics); Nucleic acid sequence; Virus; Gene; Plant virus; Antibody","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005651201,0.00005784684,0.0001664178,0.00001976795,0.00006776855,0.000003123588,0.0001489959,0.00004670159,0.00004610596],"category_scores_gemma":[0.0001158084,0.000020784,0.000061456,0.0004877417,0.0002570497,0.00004563554,0.0001022972,0.00007510816,9.630475e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009272028,"about_ca_system_score_gemma":0.000003095201,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003283332,"about_ca_topic_score_gemma":0.001479343,"domain_scores_codex":[0.9991791,0.0002671513,0.0001648504,0.0001670019,0.000105392,0.0001165651],"domain_scores_gemma":[0.9995698,0.0001606728,0.0001143085,0.00006419544,0.0000721837,0.00001878817],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001579496,0.00004794083,0.0239555,0.000004968448,0.00001475049,7.349466e-7,0.0001119581,3.123885e-7,0.9662938,0.0002438525,0.000003026651,0.009307437],"study_design_scores_gemma":[0.00003219894,0.00009463963,0.8137143,0.000002711681,0.00002095954,0.00000377985,0.00003664775,0.00001591269,0.181639,0.004278759,0.0001262793,0.00003482877],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989215,0.00007015522,0.00004268331,0.00008979304,0.00005310715,0.0001075766,0.0002889915,0.000008070736,0.000418161],"genre_scores_gemma":[0.9996905,0.0001963764,0.00005885325,0.00001615329,0.000016625,0.000006198387,0.000004548111,2.610552e-7,0.00001045583],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7897588,"threshold_uncertainty_score":0.09471105,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05873384178602663,"score_gpt":0.2526139249565258,"score_spread":0.1938800831704992,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}