{"id":"W2155893017","doi":"10.1261/rna.1649309","title":"Group IIC intron mobility into <i>attC</i> sites involves a bulged DNA stem–loop motif","year":2009,"lang":"en","type":"article","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research","keywords":"Biology; Intron; Genetics; Homing endonuclease; Ribozyme; Group I catalytic intron; Sequence motif; Integron; Group II intron; DNA; Gene; RNA; RNA splicing; Plasmid","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003433324,0.0002286731,0.0002232,0.00003830309,0.0001198366,0.00004627559,0.000293137,0.0002219639,0.00005673646],"category_scores_gemma":[0.00006933216,0.0002079703,0.0001360408,0.00009625869,0.00005945444,0.000008639796,0.00008307629,0.0001002698,0.0000508858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000227623,"about_ca_system_score_gemma":0.00003298554,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002168207,"about_ca_topic_score_gemma":0.00003255568,"domain_scores_codex":[0.9986442,0.0001256489,0.000259148,0.000484884,0.0001683348,0.0003177868],"domain_scores_gemma":[0.9991289,0.0000159391,0.0000904698,0.0005825182,0.0000543672,0.0001278525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008662486,0.0001316105,0.0002444876,0.00002624699,0.00002664596,0.000003081989,0.00005719652,0.000003140696,0.9694387,0.0003575425,0.0006849161,0.02893984],"study_design_scores_gemma":[0.0002879203,0.0005887309,0.0007698879,0.00002388495,0.00002140905,0.000005073802,0.00006714417,0.00002261182,0.9888942,0.003398125,0.005656576,0.0002644688],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942007,0.002104138,0.002096853,0.0003754749,0.0001236996,0.0003111714,0.000008314941,0.0000443918,0.0007352683],"genre_scores_gemma":[0.9960388,0.000190445,0.001680462,0.0007342694,0.0002801974,0.00003307369,0.00006625297,0.00002158089,0.0009549485],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02867537,"threshold_uncertainty_score":0.8480782,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01096816291608271,"score_gpt":0.2298698200016145,"score_spread":0.2189016570855318,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}