{"id":"W2155944292","doi":"10.1186/2191-0855-3-6","title":"Monitoring and kinetic analysis of the molecular interactions by which a repressor protein, PhaR, binds to target DNAs and poly[(R)-3-hydroxybutyrate]","year":2013,"lang":"en","type":"article","venue":"AMB Express","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Innovation Cluster (Canada)","funders":"RIKEN","keywords":"Repressor; DNA; Kinetic energy; Chemistry; Biology; Biochemistry; Biophysics; Computational biology; Cell biology; Gene; Transcription factor; Physics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001303546,0.0001440613,0.0002588339,0.00008980197,0.0001364374,0.000164638,0.0002348853,0.00004557334,0.0001993582],"category_scores_gemma":[0.00007099233,0.00009390975,0.00004837638,0.000338222,0.0000825232,0.0002182405,0.0002063538,0.00007338802,0.000006216659],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009143999,"about_ca_system_score_gemma":0.00001112806,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004385259,"about_ca_topic_score_gemma":0.00002708219,"domain_scores_codex":[0.9988999,0.0001223426,0.0002414499,0.0003293927,0.0001930216,0.0002138837],"domain_scores_gemma":[0.9992349,0.00004473668,0.0001093208,0.0004260057,0.00008866796,0.00009634257],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001315425,0.00002813709,0.00169437,0.00001887551,0.00007886843,3.57496e-7,0.0005010941,0.00001219604,0.9959573,0.00001685526,0.0001218619,0.001556989],"study_design_scores_gemma":[0.00007853207,0.00002758711,0.002568536,0.00007350904,0.0001299117,0.000001885456,0.0001408136,0.0006337365,0.9953576,0.00002667684,0.0008350225,0.0001261807],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9876449,0.01067132,0.0002575277,0.0007611706,0.0001100694,0.0002795541,0.00004697479,0.00002066647,0.0002078499],"genre_scores_gemma":[0.9977376,0.00002825693,0.001139416,0.0000578329,0.00002131942,0.0002046774,0.00000114282,0.00001309613,0.0007966772],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01064306,"threshold_uncertainty_score":0.6629229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01050432897965145,"score_gpt":0.2291848672606372,"score_spread":0.2186805382809857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}