{"id":"W2156009949","doi":"10.1093/pcp/pct119","title":"Characterization of Four Nuclear-Encoded Plastid RNA Polymerase Sigma Factor Genes in the Liverwort Marchantia polymorpha: Blue-Light- and Multiple Stress-Responsive SIG5 was Acquired Early in the Emergence of Terrestrial Plants","year":2013,"lang":"en","type":"article","venue":"Plant and Cell Physiology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; University of Tokyo; Chiba University; Ministry of Education, Culture, Sports, Science and Technology; University of Bristol","keywords":"Plastid; Biology; Gene; Marchantia polymorpha; RNA polymerase; Genome; Genetics; Nuclear gene; Sigma factor; Transcription (linguistics); RNA; Cell biology; Chloroplast","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007730933,0.0001437403,0.0002061834,0.00005035594,0.00004505426,0.000009978088,0.0002146077,0.0001131467,0.00002227169],"category_scores_gemma":[0.00002498676,0.00009151766,0.00003752385,0.00005505517,0.0000720574,0.0000119648,0.00008299425,0.00006085499,8.161528e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001256785,"about_ca_system_score_gemma":0.00002625048,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003953522,"about_ca_topic_score_gemma":0.00007498747,"domain_scores_codex":[0.9990873,0.0001540074,0.0002327081,0.0002394026,0.00008763665,0.0001989546],"domain_scores_gemma":[0.9995501,0.00008997208,0.0001556351,0.0001552818,0.00001774617,0.00003125994],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006781921,0.00009654802,0.0005882513,0.00003258844,0.00001658888,0.000004618144,0.001226434,0.000002107736,0.9970432,0.0000077505,0.00001074012,0.0002929583],"study_design_scores_gemma":[0.000656445,0.0003707466,0.02905699,0.00002748381,0.0000114433,0.00001077887,0.0008278509,0.0003149297,0.9685323,0.0000313574,0.00005178059,0.0001078965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990278,0.0002152743,0.00001815655,0.00006356933,0.00007598361,0.0003217834,0.0002598279,0.000002130515,0.00001540127],"genre_scores_gemma":[0.9986797,0.001037083,0.000008354341,0.0000629179,0.00005808386,0.00001805782,0.0001213786,0.000008475582,0.00000596286],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02851092,"threshold_uncertainty_score":0.3731982,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01020071594718168,"score_gpt":0.1941942674585133,"score_spread":0.1839935515113316,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}