{"id":"W2156023146","doi":"10.1093/gbe/evu129","title":"Composite Conserved Promoter–Terminator Motifs (PeSLs) that Mediate Modular Shuffling in the Diverse T4-Like Myoviruses","year":2014,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Dalhousie University","funders":"","keywords":"Biology; Shuffling; Terminator (solar); Modular design; Evolutionary biology; Genetics; DNA shuffling; Computational biology; Conserved sequence; Gene; Base sequence; Directed evolution; Physics; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000161578,0.0002185527,0.0001821322,0.0003333623,0.0001431274,0.0002680595,0.0001555614,0.0002018357,0.000509919],"category_scores_gemma":[0.000325822,0.0001690556,0.0003230571,0.0002047779,0.0002451731,0.0002203392,0.0003219843,0.0003807159,0.0002568754],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002128754,"about_ca_system_score_gemma":0.0001965496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001861752,"about_ca_topic_score_gemma":0.0003013099,"domain_scores_codex":[0.9998914,0.00002065715,0.000008039329,0.0000323649,0.00002500813,0.00002256017],"domain_scores_gemma":[0.9998028,0.000040147,0.0000690043,0.00001291714,0.00001407447,0.00006115635],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001476701,0.00001596906,0.001438174,0.00002821512,0.000005378525,0.0001271874,0.00003219507,0.0001293156,0.9964429,0.0001468375,0.000009515193,0.001476744],"study_design_scores_gemma":[0.00009365803,0.0009704466,0.07525971,0.00003491664,0.00006348289,0.002455303,0.0002790097,0.006203313,0.9098641,0.0009030649,0.00384212,0.00003092327],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958151,0.0001873253,0.003612882,0.00001058232,0.000003831672,0.00001695583,0.00008191146,0.00002608557,0.0002453292],"genre_scores_gemma":[0.9940711,0.0001060165,0.004510991,0.00001842656,0.000006382968,0.00002400642,0.0005879988,0.00001591856,0.000659108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000509919,"threshold_uncertainty_score":0.001705825,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03507932943501659,"score_gpt":0.2980432423950735,"score_spread":0.2629639129600569,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}