{"id":"W2156038946","doi":"10.1128/mbio.01396-15","title":"The Widespread Multidrug-Resistant Serotype O12 Pseudomonas aeruginosa Clone Emerged through Concomitant Horizontal Transfer of Serotype Antigen and Antibiotic Resistance Gene Clusters","year":2015,"lang":"en","type":"article","venue":"mBio","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; University of Guelph","funders":"Canadian Institutes of Health Research; Villum Fonden","keywords":"Serotype; Pseudomonas aeruginosa; clone (Java method); Multiple drug resistance; Microbiology; Horizontal gene transfer; Antibiotics; Gene transfer; Antibiotic resistance; Virology; Biology; Gene; Bacteria; Genome; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001183327,0.000280447,0.0002313531,0.0003148273,0.0003398845,0.0003611512,0.0002582961,0.0004451431,0.0008723759],"category_scores_gemma":[0.0003259103,0.0001457929,0.0002814276,0.0003791897,0.0002135403,0.0002431749,0.0005260273,0.0007414003,0.000257692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002448656,"about_ca_system_score_gemma":0.0002628188,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001598154,"about_ca_topic_score_gemma":0.001157855,"domain_scores_codex":[0.9998363,0.00001391466,0.00001364717,0.00004816905,0.00004257319,0.00004539414],"domain_scores_gemma":[0.9997293,0.00004400648,0.00007573265,0.000036388,0.0000614744,0.00005312986],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001960599,0.0001235532,0.09004033,0.00009690716,0.00002849567,0.00109961,0.0004891368,0.00006732007,0.8956203,0.0002172783,0.00009646411,0.01192451],"study_design_scores_gemma":[0.00004674405,0.001353555,0.779946,0.00005603153,0.0002038019,0.01090096,0.001084367,0.001953528,0.1989216,0.0004146709,0.005077419,0.00004134328],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980919,0.0001053686,0.001226093,0.00003766376,0.000005237277,0.00002685615,0.00006984329,0.0000186611,0.0004183286],"genre_scores_gemma":[0.9977217,0.0001262785,0.001473608,0.00005794007,0.00001147897,0.00002297264,0.0002106379,0.000006791698,0.0003684439],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001598154,"threshold_uncertainty_score":0.003177762,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01730273684144855,"score_gpt":0.2500065658355033,"score_spread":0.2327038289940548,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}