{"id":"W2156064797","doi":"10.1128/mbio.00579-12","title":"EvolutionaryGenomics of Salmonellaenterica Subspecies","year":2013,"lang":"en","type":"article","venue":"mBio","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":137,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; United States - Israel Binational Agricultural Research and Development Fund; U.S. Department of Agriculture","keywords":"Subspecies; Salmonella enterica; Biology; Phylogenetics; Nonsynonymous substitution; Evolutionary biology; Gene; Genome; Genetics; Phylogenetic tree; Zoology; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003124415,0.0002639568,0.0002567265,0.00128358,0.0004637011,0.0004612551,0.0002151895,0.0003363161,0.0009089629],"category_scores_gemma":[0.0006106761,0.0001574754,0.0003242259,0.001073209,0.000206294,0.0002588886,0.0005513084,0.0003685554,0.0002643157],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004013176,"about_ca_system_score_gemma":0.0002400871,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002298268,"about_ca_topic_score_gemma":0.003672943,"domain_scores_codex":[0.9997688,0.00002802363,0.00001552219,0.00009327626,0.00004375361,0.000050689],"domain_scores_gemma":[0.999496,0.0001051075,0.0001141432,0.00004027466,0.0001604031,0.00008409249],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005822519,0.0001225431,0.3424408,0.0002015189,0.0002105376,0.0003331827,0.001476795,0.0008869771,0.628509,0.0003042639,0.0002841193,0.02464807],"study_design_scores_gemma":[0.000005519808,0.0001173645,0.9916105,0.00001541147,0.00003775642,0.0003177313,0.0004913839,0.001482378,0.004205002,0.00008287166,0.001626378,0.000007790853],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988721,0.0001423713,0.0001959991,0.00001954159,0.000002054803,0.000005240661,0.000343093,0.000004517849,0.0004151048],"genre_scores_gemma":[0.9955826,0.0001610373,0.0008652654,0.00003986603,0.000004734296,0.00001716501,0.002710639,0.00001435035,0.0006043326],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002298268,"threshold_uncertainty_score":0.004569829,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006799698446020169,"score_gpt":0.1910100463293617,"score_spread":0.1842103478833416,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}