{"id":"W2156315970","doi":"10.1128/aem.01774-14","title":"Illuminating Microbial Dark Matter in Meromictic Sakinaw Lake","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":123,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"","keywords":"Biology; Chloroflexi (class); Metagenomics; Methanogen; Archaea; Anoxic waters; Ecology; Phylum; Euryarchaeota; Methanomicrobiales; Proteobacteria; Methanosarcina; 16S ribosomal RNA; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002697372,0.000231457,0.000299883,0.00004589479,0.0001961251,0.00000886307,0.0002511634,0.0002355782,0.006358417],"category_scores_gemma":[0.000004941358,0.00023122,0.00003801703,0.00006322761,0.0008725029,0.00005422797,0.0005663495,0.0003437398,0.001691525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007279202,"about_ca_system_score_gemma":0.000002285487,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001010033,"about_ca_topic_score_gemma":0.001207844,"domain_scores_codex":[0.9986045,0.0001933585,0.0002734017,0.0004510365,0.00002318671,0.000454503],"domain_scores_gemma":[0.999468,0.000119607,0.00008668686,0.0002642334,4.409399e-7,0.00006106568],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003215434,0.0001058181,0.05097616,0.000006114719,0.000008094678,0.000001602885,0.0003510582,0.00004980652,0.9442087,0.000090852,0.002371861,0.001797725],"study_design_scores_gemma":[0.00424374,0.0004424012,0.7908486,0.00002532537,0.00005896054,0.0004424492,0.0007071557,0.00009378034,0.03224036,0.005750444,0.1635632,0.001583546],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9842843,0.00001702733,0.00003007475,0.0001622102,0.0001006177,0.0001934646,0.00003002134,0.00001651968,0.01516571],"genre_scores_gemma":[0.9965402,0.00002200641,0.0004854915,0.002415668,0.000028166,0.00001862613,0.0002841652,0.0000198222,0.0001858492],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9119684,"threshold_uncertainty_score":0.9990858,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002757841028132892,"score_gpt":0.1630788797242906,"score_spread":0.1603210386961577,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}