{"id":"W2156705208","doi":"10.1099/ijs.0.034926-0","title":"Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi","year":2012,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":556,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Strategic Environmental Research and Development Program; National Science Foundation","keywords":"Biology; Dehalococcoides; Electron acceptor; Reductive dechlorination; Bioremediation; 16S ribosomal RNA; Microbiology; Bacteria; Nuclear chemistry; Biochemistry; Biodegradation; Chemistry; Organic chemistry; Ecology; Vinyl chloride","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002338556,0.000722265,0.00110347,0.0005409484,0.0004946811,0.0002663833,0.0009191081,0.0004221763,0.0002568693],"category_scores_gemma":[0.0009443935,0.0005304309,0.0001791406,0.00064936,0.0006592929,0.00088603,0.000844146,0.000502263,0.000236288],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005247232,"about_ca_system_score_gemma":0.0002068655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003396279,"about_ca_topic_score_gemma":0.0005569301,"domain_scores_codex":[0.9949563,0.0004122558,0.002395176,0.0007685411,0.0005969125,0.0008708108],"domain_scores_gemma":[0.9963306,0.0005360579,0.001488356,0.000416437,0.0005596899,0.0006688104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003357464,0.00019858,0.06199475,0.000283605,0.000314168,0.00001888443,0.001961407,0.0001316728,0.9327685,0.0001151119,0.001641851,0.0002356853],"study_design_scores_gemma":[0.008671255,0.001267313,0.8685587,0.005734586,0.0009954137,0.01051817,0.006415599,0.0007446958,0.08088093,0.0002561474,0.01264594,0.003311244],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9896402,0.001467135,0.001497209,0.002981093,0.002512396,0.001487722,0.0003216318,0.00004414838,0.00004844313],"genre_scores_gemma":[0.9869428,0.000335001,0.0100307,0.001566907,0.0008377745,0.00005137773,0.00009110917,0.00006679834,0.0000775318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8518876,"threshold_uncertainty_score":0.9997147,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01772105797457793,"score_gpt":0.2405026147323105,"score_spread":0.2227815567577326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}