{"id":"W2156733538","doi":"10.1074/jbc.m111.255794","title":"Pseudomonas aeruginosa d-Arabinofuranose Biosynthetic Pathway and Its Role in Type IV Pilus Assembly","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Biological Sciences; University of Toronto; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Pilus; Pilin; Pseudomonas aeruginosa; Biology; Microbiology; Mutant; Gene cluster; Gene; Protein subunit; Heterologous; Mycobacterium smegmatis; Bacteria; Escherichia coli; Biochemistry; Genetics; Mycobacterium tuberculosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002480949,0.0001909382,0.0002879942,0.00003761701,0.00002994405,0.00001318209,0.0002932486,0.0006084464,0.00006437085],"category_scores_gemma":[0.0001888015,0.0001390102,0.00009243222,0.0001061163,0.0001269818,0.000004223841,0.0001626507,0.0002665487,0.000004348682],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001329455,"about_ca_system_score_gemma":0.00005959111,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003173054,"about_ca_topic_score_gemma":0.000001873781,"domain_scores_codex":[0.9989117,0.00004860067,0.0004158286,0.0002690882,0.0000846,0.000270228],"domain_scores_gemma":[0.9993346,0.00001341498,0.0002312372,0.0001734505,0.0001226285,0.000124721],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002932866,0.0001433124,0.002113329,0.00001344382,0.0000262868,0.00004505077,0.00002130288,4.970752e-7,0.9953323,0.00002311177,0.00002235565,0.001965727],"study_design_scores_gemma":[0.000549765,0.0007590917,0.005363518,0.00002353788,0.00001024249,0.0003838039,0.00006027064,0.000008418135,0.9889857,0.0002737683,0.003391898,0.0001900004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954184,0.00352358,0.000007417707,0.0001067556,0.0001295258,0.00006284814,0.000008703504,0.000006625743,0.0007361707],"genre_scores_gemma":[0.9974089,0.0018459,0.0004073806,0.00007519299,0.0001904359,0.000001917426,0.000007162699,0.00001090352,0.00005223654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006346612,"threshold_uncertainty_score":0.5668671,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01982827693994251,"score_gpt":0.2242179817767841,"score_spread":0.2043897048368416,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}