{"id":"W2156920049","doi":"10.1093/nar/gkq375","title":"PROSESS: a protein structure evaluation suite and server","year":2010,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"","keywords":"Computer science; Protein Data Bank; Suite; Threading (protein sequence); Protein structure prediction; Python (programming language); Web server; Nuclear magnetic resonance spectroscopy; Protein structure; Algorithm; Crystallography; Biology; Physics; Chemistry; The Internet","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00463085,0.002375866,0.001999974,0.001724653,0.0006741799,0.001866612,0.003806519,0.0008780998,0.02390969],"category_scores_gemma":[0.00500643,0.001014588,0.001206836,0.00165556,0.0003530399,0.001666236,0.001743899,0.001859236,0.02694455],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001066916,"about_ca_system_score_gemma":0.002195999,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0022115,"about_ca_topic_score_gemma":0.002111999,"domain_scores_codex":[0.9979503,0.0006005532,0.0001964129,0.0002243179,0.0008741665,0.000154306],"domain_scores_gemma":[0.9983366,0.0005402347,0.0001670952,0.0001639899,0.0006438138,0.0001482028],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00118046,0.000279555,0.001780847,0.001360959,0.0002117106,0.0002250452,0.00008234476,0.01132141,0.01095342,0.004456373,0.8947055,0.07344245],"study_design_scores_gemma":[0.001698818,0.0008434192,0.007624579,0.0005472538,0.0002285869,0.001198376,0.000113169,0.3209454,0.04450131,0.0170106,0.6049014,0.0003871333],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.03492815,0.003384769,0.2405342,0.001186802,0.0006121931,0.002251691,0.190786,0.5030246,0.02329158],"genre_scores_gemma":[0.05566733,0.002774555,0.2693975,0.001165009,0.0001489698,0.004297942,0.5959442,0.05243981,0.01816458],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.02390969,"threshold_uncertainty_score":0.07998586,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02072029417835552,"score_gpt":0.3387310626523083,"score_spread":0.3180107684739528,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}