{"id":"W2157047481","doi":"10.1534/genetics.114.162883","title":"Birth, Death, and Diversification of Mobile Promoters in Prokaryotes","year":2014,"lang":"en","type":"article","venue":"Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Biology; Mobile genetic elements; Genome; Promoter; Genetics; Gene duplication; Horizontal gene transfer; Gene; Computational biology; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009397762,0.00007147126,0.00008880722,0.00002886616,0.00002235926,0.000004493512,0.00007167475,0.00005336123,0.000001316257],"category_scores_gemma":[0.00001828192,0.0000705145,0.00001919635,0.00003575971,0.00005354287,2.518723e-7,0.0000825224,0.00002178938,8.092567e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002873328,"about_ca_system_score_gemma":0.00001209744,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000863782,"about_ca_topic_score_gemma":0.0000278945,"domain_scores_codex":[0.9995342,0.00002328754,0.0001242004,0.0001712831,0.0000445291,0.0001024571],"domain_scores_gemma":[0.9997236,0.000007209407,0.0000464494,0.0001633356,0.00003370399,0.00002575698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001357869,0.00003455603,0.2615965,0.00003319002,0.00001708266,1.345233e-7,0.0002237433,0.0002300243,0.7257919,0.00009456328,0.00003134965,0.01193338],"study_design_scores_gemma":[0.0006712666,0.0007599407,0.4631358,0.00001276598,0.0000183598,0.000004329636,0.0001868527,0.0004211669,0.517799,0.0008764382,0.01589262,0.0002214459],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977291,0.001490924,0.0002834354,0.00002670557,0.00003572305,0.0001643236,0.000008059445,0.000001139395,0.0002605416],"genre_scores_gemma":[0.9967727,0.0008540748,0.002234524,0.00002551563,0.00003743253,0.00001590309,0.000007886145,0.000007749631,0.00004418638],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2079929,"threshold_uncertainty_score":0.2875498,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009223566398650117,"score_gpt":0.2180919389763301,"score_spread":0.20886837257768,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}