{"id":"W2157168213","doi":"10.1093/jnci/dju357","title":"Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype","year":2014,"lang":"en","type":"article","venue":"JNCI Journal of the National Cancer Institute","topic":"Breast Cancer Treatment Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":208,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Subtyping; Breast cancer; Computational biology; Gene expression profiling; Robustness (evolution); Computer science; Bioinformatics; Gene expression; Oncology; Gene; Cancer; Medicine; Internal medicine; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005291175,0.0004886618,0.0007189839,0.001730608,0.0005898878,0.001447643,0.001019022,0.0005012068,0.001033774],"category_scores_gemma":[0.01301606,0.0002089608,0.0009416034,0.001318917,0.0004477045,0.0006462877,0.001554024,0.001055593,0.0007304926],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001034161,"about_ca_system_score_gemma":0.001240177,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001813145,"about_ca_topic_score_gemma":0.00275182,"domain_scores_codex":[0.9968702,0.0006114186,0.0003311287,0.001118665,0.0008588068,0.0002098465],"domain_scores_gemma":[0.9933175,0.002215342,0.001038955,0.001845707,0.00135435,0.0002281154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001582646,0.0001871007,0.6255038,0.0008687605,0.000665327,0.0001469074,0.0004785977,0.04878297,0.07122434,0.005105744,0.007636553,0.2378172],"study_design_scores_gemma":[0.0001565768,0.0007385846,0.5369769,0.0002623848,0.0007197934,0.00174282,0.000573564,0.2834096,0.12396,0.02583849,0.02547667,0.0001446248],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7915949,0.001720522,0.1884497,0.0005750087,0.0001143354,0.0003608207,0.01022838,0.00138049,0.005575791],"genre_scores_gemma":[0.8727627,0.0003658471,0.1078975,0.0003351443,0.0000765758,0.0002287909,0.01715404,0.0001791823,0.001000152],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005291175,"threshold_uncertainty_score":0.02798277,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01638643560388061,"score_gpt":0.2912581301619767,"score_spread":0.2748716945580961,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}