{"id":"W2157491697","doi":"10.1099/jmm.0.050369-0","title":"Genetic and antigenic characterization of invasive endemic serogroup B Neisseria meningitidis from Ontario, Canada, in 2001–2010","year":2012,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Public Health Ontario; University of Toronto","funders":"National Institutes of Health; Wellcome Trust","keywords":"Neisseria meningitidis; Outbreak; Biology; Genotype; Multilocus sequence typing; Meningococcal disease; Genetic diversity; Neisseriaceae; Molecular epidemiology; Serotype; clone (Java method); Virology; Microbiology; Genetics; Gene; Bacteria; Medicine; Population; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003879695,0.0001315433,0.0004638043,0.000124758,0.0000379186,0.000004144564,0.0001707976,0.0004160367,0.003248514],"category_scores_gemma":[0.0001531882,0.0001057563,0.00005171145,0.00008230851,0.0001121251,0.00009643599,0.0000699212,0.0004549909,0.000005486515],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001026129,"about_ca_system_score_gemma":0.0007074613,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.4522635,"about_ca_topic_score_gemma":0.6987585,"domain_scores_codex":[0.9986581,0.0002256939,0.000674192,0.0001128895,0.00001974171,0.0003093903],"domain_scores_gemma":[0.9991443,0.0001769977,0.0004335532,0.00009248028,0.00007462632,0.00007805556],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007481506,0.00007126193,0.2542224,0.000006406002,0.0001006252,0.000003139151,0.0002688842,1.112088e-7,0.7438193,0.00001047046,0.0007899022,0.0006326842],"study_design_scores_gemma":[0.001528847,0.0001868211,0.8956696,0.0001018883,0.00005517771,0.001287662,0.00008409847,3.305799e-7,0.08010029,0.0000164677,0.02084995,0.0001188645],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948315,0.001798988,0.00003233555,0.0004089817,0.002796624,0.00007264988,0.000047979,0.000002843107,0.000008106279],"genre_scores_gemma":[0.9987816,0.0006662844,0.00006561022,0.0001365504,0.0001657648,0.000001635249,0.00008825053,0.000008108393,0.00008625503],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.663719,"threshold_uncertainty_score":0.9976627,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01131771183473843,"score_gpt":0.221380753497004,"score_spread":0.2100630416622656,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}