{"id":"W2157578792","doi":"10.1094/phyto-09-13-0263-r","title":"Development of a Multiplex Assay for Genus- and Species-Specific Detection of<i>Phytophthora</i>Based on Differences in Mitochondrial Gene Order","year":2014,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":106,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Agricultural Research Service; U.S. Forest Service; National Institute of Food and Agriculture; U.S. Department of Agriculture; Washington State University; Oregon State University","keywords":"Biology; Amplicon; Phytophthora; Genetics; Indel; Intergenic region; TaqMan; In silico; Gene; Multiplex; Computational biology; Polymerase chain reaction; Botany; Genome; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001396449,0.001079705,0.001008678,0.001204081,0.0003501222,0.0008090714,0.0007403461,0.001060164,0.001156081],"category_scores_gemma":[0.001633329,0.0006786191,0.0006215649,0.0006540437,0.000383406,0.0006398323,0.0006455342,0.001070481,0.0008169315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004763312,"about_ca_system_score_gemma":0.0005132464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003498776,"about_ca_topic_score_gemma":0.0009409645,"domain_scores_codex":[0.9982986,0.0002901663,0.0001464954,0.0006880794,0.0004253946,0.0001512454],"domain_scores_gemma":[0.9990356,0.0002709131,0.000261156,0.00009326413,0.0002047344,0.0001343065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007607356,0.00004740103,0.00133992,0.00009138618,0.00002001867,0.00002272414,0.00004366775,0.0001395651,0.9909118,0.0001593109,0.00007977369,0.007068357],"study_design_scores_gemma":[0.00002596772,0.0005879904,0.00679585,0.00004397553,0.00007698386,0.0003034871,0.00006104141,0.007123626,0.9799707,0.0002450741,0.004722008,0.00004331185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.552026,0.003123699,0.4321274,0.0003530695,0.0004674442,0.001562636,0.003193184,0.002687644,0.004458863],"genre_scores_gemma":[0.4298097,0.001245654,0.5595493,0.0003250588,0.00008246997,0.001382004,0.003164134,0.0001082361,0.004333341],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001396449,"threshold_uncertainty_score":0.007385194,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02807715560173588,"score_gpt":0.2114791887896044,"score_spread":0.1834020331878686,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}